YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3H8.04
Organism:	Schizosaccharomyces pombe
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3H8.04.

Description	E-value	Query Range	Subject Range
gi\|42820681 - gi\|42820681\|emb\|CAF31994.1\| hypothetical protein [Aspergillus fumigatus]	313.0	[0..67]	[335..280]
gi\|70995784, gi\|... - gi\|70995784\|ref\|XP_752647.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668502...	312.0	[0..67]	[335..160]
gi\|42551708, gi\|... - gi\|46123635\|ref\|XP_386371.1\| hypothetical protein FG06195.1 [Gibberella zeae PH-1], gi\|42551708\|gb\|E...	307.0	[0..99]	[335..307]
gi\|40746413, gi\|... - gi\|67517569\|ref\|XP_658605.1\| hypothetical protein AN1001.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	304.0	[0..91]	[335..295]
gi\|39944354, gi\|... - gi\|39944354\|ref\|XP_361714.1\| hypothetical protein MGG_04188 [Magnaporthe grisea 70-15], gb\|EAA50429....	292.0	[0..83]	[335..332]
gi\|88180534, gi\|... - gi\|88180534\|gb\|EAQ88002.1\| hypothetical protein CHGG_04621 [Chaetomium globosum CBS 148.51], gi\|1161...	286.0	[0..99]	[335..329]
gi\|115491863, gi... - gi\|115491863\|ref\|XP_001210559.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	285.0	[0..75]	[335..303]
gi\|169763432 - gi\|169763432\|ref\|XP_001727616.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83770644 - gi\|83770644\|dbj\|BAE60777.1\| unnamed protein product [Aspergillus oryzae]	285.0	[0..113]	[335..199]
gi\|111065854 - gi\|111065854\|gb\|EAT86974.1\| hypothetical protein SNOG_05910 [Phaeosphaeria nodorum SN15]	277.0	[0..108]	[335..316]
gi\|90301730, gi\|... - gi\|90301730\|gb\|EAS31361.1\| hypothetical protein CIMG_06840 [Coccidioides immitis RS], gi\|119183939\|r...	270.0	[0..89]	[335..304]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPACYCATST SLENNELLYK NIRNLFSTSR SFPIEQEWMN LKSISQMKDF FSNFPGNSKA  60
   61 NNHFLCNSPL KFEIFNNEKS VKPSNGPHLF TRCSCRCNKL L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.513	a.2.3	Chaperone J-domain
View	Download	0.489	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.599	a.71.1	Endoplasmic reticulum protein ERP29, C-domain
View	Download	0.560	a.71.1	Endoplasmic reticulum protein ERP29, C-domain
View	Download	0.520	a.71.1	Endoplasmic reticulum protein ERP29, C-domain

Predicted Domain #2

Region A:
Residues: [102-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGDYITQQQP IDASAEHSLN AKGINTYSLK NCFQRSGFIG SYEESLFSGH MPYCSSVPFE  60
   61 FSIEIGVISF CRCKPSLVFP PHLKINFVAY SLVGNVDNVQ FPYIGRFRLR SQKSDKVMNK 120
  121 GYPFGYRIPS VGQLQLILRQ TNGLVIKVFL VPYNVSSMVD CSKTWIRQKH YLQQLDDKSG 180
  181 KILSHLKFGL QLQIICTSAG HHYLYDSQRI IFVQQSLGGL YGNTKIVNET LLSESCR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits