YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3H8.03
Organism:	Schizosaccharomyces pombe
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3H8.03.

Description	E-value	Query Range	Subject Range
gi\|40744301, gi\|... - gi\|67524897\|ref\|XP_660510.1\| hypothetical protein AN2906.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	137.0	[0..1]	[105..86]
gi\|26373563 - gi\|26373563\|dbj\|BAC25326.1\| unnamed protein product [Mus musculus]	136.0	[0..10]	[105..26]
IMG2 - Mitochondrial ribosomal protein of the large subunit IMG2_YEAST - 54S ribosomal protein IMG2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|151943883 - gi\|151943883\|gb\|EDN62183.1\| mitochondrial ribosomal protein of the small subunit [Saccharomyces cere... gi\|190406492 - gi\|190406492\|gb\|EDV09759.1\| 60S ribosomal protein IMG2, mitochondrial precursor [Saccharomyces cerev...	131.0	[0..4]	[103..42]
gi\|109105539 - gi\|109105539\|ref\|XP_001114410.1\| PREDICTED: similar to mitochondrial ribosomal protein L49 isoform 1...	129.0	[0..1]	[105..23]
gi\|62087900 - gi\|62087900\|dbj\|BAD92397.1\| mitochondrial ribosomal protein L49 variant [Homo sapiens]	129.0	[0..12]	[105..48]
gi\|114638499 - gi\|114638499\|ref\|XP_001168564.1\| PREDICTED: similar to NOF1 isoform 1 [Pan troglodytes]	128.0	[0..1]	[105..23]
gi\|33086514, gi\|... - gi\|33086514\|gb\|AAP92569.1\| Aa2-277 [Rattus norvegicus], gi\|114145567\|ref\|NP_001041348.1\| mitochondri...	124.0	[0..18]	[105..77]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSLKPVLS NLRFNSTIAS ESLRFHVSRT PSKNLPVYLD YKQRGTKILT LIRKIHGDSN  60
   61 ALRLRLISTL KMSPKDVYVN KLTNQVVLKG NHIVTVREWL QDQGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.46
Match:	2if1A
Description:	HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits