YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC11D3.08c
Organism:	Schizosaccharomyces pombe
Length:	550 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC11D3.08c.

Description	E-value	Query Range	Subject Range
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	287.0	[0..4]	[550..90]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	283.0	[0..1]	[522..1]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	282.0	[0..40]	[550..138]
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	279.0	[0..7]	[549..80]
gi\|42547995, gi\|... - gi\|46115914\|ref\|XP_383975.1\| hypothetical protein FG03799.1 [Gibberella zeae PH-1], gi\|42547995\|gb\|E...	275.0	[0..5]	[549..74]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	275.0	[0..7]	[547..40]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	273.0	[0..3]	[546..102]

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Predicted Domain #1

Region A:
Residues: [1-550]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIDKESLK QNQKQWENEV ELGESREANQ DDELLMSLGY KPEFTREFSY VSIFGQSFGS  60
   61 MGLCPAMAGS LIFSMNCGGG GMVWSWIIGC ICLIPVSISL GELASSMPTS GGLYFWIFTL 120
  121 ASPSSRAFLC WVCGYVSVLG YATIYASTVY SASSMVQALA VIGSPSYSPT KYEQYGIYAA 180
  181 LLFVISAMTA IPSRVIAKVN IINITFQFLV SIILIIALAA GSDSTTRNSG SFIFGDFTNY 240
  241 SGWSNMGWAF ILSFTTPVWV VSGFESSAAV AEESTNAAKA APFAMISSLG VATILGWCIV 300
  301 ITVVATMGHD FNAILGSSLG QPVAQVLVNN VGNKGALGIF SLLVIALCLN CISLLIAASR 360
  361 EVFAFCRDGG IPGSRYLRLL TKQKVPLNAI LLVLLYSLLV GLLILVNVTA ISSVFNLAII 420
  421 ALYIAYSGPL MCRFVYNKFQ PGVFYVGKWS KPAALWSLVW MWFMILMLLF PQYQKPNQDE 480
  481 MNWAIVVLGF VMVFCVVYYY LPKIGGKTFF TGPIPTVQQE NEYISGVPLN ELSLSSLPLP 540
  541 KDFDQKQITE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.54
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits