YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC11D3.06
Organism:	Schizosaccharomyces pombe
Length:	455 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC11D3.06.

Description	E-value	Query Range	Subject Range
gi\|113548993, gi... - gi\|115453843\|ref\|NP_001050522.1\| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi\|113548993...	310.0	[0..7]	[455..645]
gi\|38105054, gi\|... - gi\|39942086\|ref\|XP_360580.1\| hypothetical protein MG03123.4 [Magnaporthe grisea 70-15], gb\|EAA51528....	275.0	[0..4]	[448..288]
gi\|42551894, gi\|... - gi\|46123591\|ref\|XP_386349.1\| hypothetical protein FG06173.1 [Gibberella zeae PH-1], gi\|42551894\|gb\|E...	272.0	[0..4]	[418..670]
gi\|30047775 - gi\|30047775\|gb\|AAH50592.1\| SLC47A1 protein [Homo sapiens]	250.0	[0..1]	[440..48]
gi\|7487825, gi\|7... - pir\|\|T05472 hypothetical protein T8O5.110 - Arabidopsis thaliana, gi\|7269035\|emb\|CAB79145.1\| putati...	248.0	[0..28]	[436..1]
gi\|28925921, gi\|... - gi\|32408909\|ref\|XP_324935.1\| hypothetical protein [Neurospora crassa], gi\|28925921\|gb\|EAA34916.1\| co... gi\|85111887 - gi\|85111887\|ref\|XP_964152.1\| hypothetical protein NCU00755 [Neurospora crassa OR74A]	248.0	[0..4]	[448..210]
YD338_YEAST - Uncharacterized transporter YDR338C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR3... YDR338C - Putative protein of unknown function	246.0	[0..4]	[449..225]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRPLTEVKY LLINSAPVIL GYALQNSLQT SSVIVTGRLG PSELSVAAFA YMFAMSTGWL  60
   61 IALGGTTAFD TLGSNLWGAG KKQELGILLQ TGFIVLSILY LPICLVWWYS KPILIFLHQT 120
  121 PELAEASQKF LRYLIPGGLG YVCFELLKKF LQTQEITRAG SYILLVTSPL NVALNFLLVH 180
  181 YYG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.39794
Match:	PF01554.9
Description:	No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [184-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGLKGAPLAT GLSYWLSFIL LTQYAKYVKG AEAWNGWNKR CLENFGPFVK LSLLGIVMVG  60
   61 TEWWAFEIVA LVAGKLGAVP LAAQSVIMTT DQLLNTIPFG LGIITSNRVA YYLGAGLPDN 120
  121 ASLTAKVAAI VGVAVGSVIM ITMIAVRNIY GRIFTNDPDV IQLVALVMPL VAAFQISDSL 180
  181 NGTMGGALRG TGRQKVGAIV NITAYYLFAL PLGIYLAFHG KGLVGLWIGQ VIALSIVGIL 240
  241 ELKIVMATDW ISQSRKAISR FGDSSELTAL LN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.585027
Match:	PF01554.9
Description:	No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits