YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC11D3.04c
Organism:	Schizosaccharomyces pombe
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC11D3.04c.

Description	E-value	Query Range	Subject Range
gi\|34105020, gi\|... - gi\|34499169\|ref\|NP_903384.1\| hypothetical protein CV_3714 [Chromobacterium violaceum ATCC 12472], gi...	202.0	[0..2]	[128..7]
gi\|56542644, gi\|... - gi\|56551070\|ref\|YP_161909.1\| hypothetical protein ZMO0174 [Zymomonas mobilis subsp. mobilis ZM4], gi...	138.0	[0..1]	[130..1]
gi\|58038793, gi\|... - gi\|58038793\|ref\|YP_190757.1\| hypothetical protein GOX0318 [Gluconobacter oxydans 621H], gi\|58001207\|...	130.0	[0..6]	[130..13]
gi\|89072144, gi\|... - gi\|89072144\|ref\|ZP_01158740.1\| hypothetical protein SKA34_08918 [Photobacterium sp. SKA34], gi\|89052...	70.0	[0..3]	[128..67]
gi\|52349759, gi\|... - gi\|52787257\|ref\|YP_093086.1\| hypothetical protein BLi03568 [Bacillus licheniformis ATCC 14580], gi\|5...	53.0	[0..4]	[129..5]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDSESFIR QLFKAFTDFS TDVESLRGFL TPDYRQLVDG RELTLDDFIS HAKALRTHLH  60
   61 RLDINVQQIV CQGNKAATVH IAHAIRSSGE SSRIKVIAFY SFKDGRISLI DELTYVLEGG 120
  121 NADRELGSVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.0
Match:	2geyA
Description:	No description for 2geyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits