YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC11D3.03c
Organism:	Schizosaccharomyces pombe
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC11D3.03c.

Description	E-value	Query Range	Subject Range
gi\|38099658, gi\|... - gi\|39941872\|ref\|XP_360473.1\| hypothetical protein MG10785.4 [Magnaporthe grisea 70-15], gb\|EAA46974....	400.0	[0..10]	[300..16]
gi\|42550496, gi\|... - gi\|46117426\|ref\|XP_384731.1\| hypothetical protein FG04555.1 [Gibberella zeae PH-1], gi\|42550496\|gb\|E...	392.0	[0..7]	[300..1]
gi\|50405943, gi\|... - gi\|50405943\|ref\|XP_456591.1\| hypothetical protein DEHA0A06204g [Debaryomyces hansenii CBS767], gi\|49...	378.0	[0..10]	[301..5]
gi\|44985891 - gi\|44985891\|gb\|AAS54502.1\| AGR013Cp [Ashbya gossypii ATCC 10895] gi\|44985891, gi\|... - gi\|45201108\|ref\|NP_986678.1\| AGR013Cp [Ashbya gossypii ATCC 10895], gi\|44985891\|gb\|AAS54502.1\| AGR01...	375.0	[0..4]	[298..3]
gi\|71734431, gi\|... - gi\|71734431\|ref\|YP_274871.1\| hypothetical protein PSPPH_2681 [Pseudomonas syringae pv. phaseolicola ...	369.0	[0..25]	[299..6]
tr\|Q881T6\|Q881T6... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_2796 PE=4 SV=1 gi\|28853227, gi\|... - gi\|28869982\|ref\|NP_792601.1\| hypothetical protein PSPTO_2796 [Pseudomonas syringae pv. tomato str. D...	368.0	[0..25]	[299..6]
gi\|88176857, gi\|... - gi\|88176857\|gb\|EAQ84325.1\| hypothetical protein CHGG_08339 [Chaetomium globosum CBS 148.51], gi\|1162...	368.0	[0..7]	[300..120]
gi\|63256467, gi\|... - gi\|66045760\|ref\|YP_235601.1\| hypothetical protein Psyr_2524 [Pseudomonas syringae pv. syringae B728a...	368.0	[0..25]	[299..33]
gi\|70731651, gi\|... - gi\|70731651\|ref\|YP_261392.1\| hypothetical protein PFL_4300 [Pseudomonas fluorescens Pf-5], gi\|683459...	366.0	[0..25]	[299..6]
gi\|77384260, gi\|... - gi\|77460257\|ref\|YP_349764.1\| hypothetical protein Pfl01_4036 [Pseudomonas fluorescens Pf0-1], gi\|773...	365.0	[0..25]	[299..6]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEISELASS SQKPEKTKYN LPKPLPAYYP HPGSPLYADK ELYARIANAP KKLVGRHVCQ  60
   61 PRTGLAVKIP QKSIFSIVVP EGPQVCDLNI WNF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNPRERFWAA RTRQIHSAHV STYDRLWSTL PYLRPLVTII GDSLQARHDE WGGRVHDTLG  60
   61 TRCDPYIDKL ISGKDNDLHC HSNLTRAIMP YGLTEFDVHD VLNVFQVTGL NEYDQYFMET 120
  121 CPATSKDYFQ CFAEQDLLVA ISACP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [239-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGDLSNWGWG EDATDVESSK MVDCCRPLAI EVYELEDEEN SLKGWVPPQV VNYTGNHGLK  60
   61 APSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits