YRC Public Data Repository - Protein Structure Prediction

Protein:	fip1
Organism:	Schizosaccharomyces pombe
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fip1.

Description	E-value	Query Range	Subject Range
gi\|238878216 - gi\|238878216\|gb\|EEQ41854.1\| plasma membrane iron permease [Candida albicans WO-1] orf19.7219 - FTR1 CGDID:CAL0003776 Assembly 19, Contig19-2507 (32650, 33795) CDS, translated using codon table 12... gi\|46436622, gi\|... - gi\|68482005\|ref\|XP_715020.1\| hypothetical protein CaO19.7219 [Candida albicans SC5314], gi\|46436622\|...	402.0	[0..3]	[322..2]
gi\|27525865 - gi\|27525865\|emb\|CAD21517.1\| putative iron transferase [Claviceps purpurea]	401.0	[0..1]	[356..1]
gi\|33637944 - gi\|33637944\|gb\|AAQ24109.1\| high-affinity iron permease [Rhizopus oryzae]	381.0	[0..1]	[360..1]
gi\|7770291 - gi\|7770291\|gb\|AAF69680.1\| high-affinity iron permease CaFTR1 [Candida albicans]	376.0	[0..3]	[322..2]
gi\|46121563, gi\|... - gi\|46121563\|ref\|XP_385336.1\| hypothetical protein FG05160.1 [Gibberella zeae PH-1], gi\|42551601\|gb\|E...	371.0	[0..1]	[348..1]
gi\|50422565, gi\|... - gi\|50422565\|ref\|XP_459854.1\| hypothetical protein DEHA0E13211g [Debaryomyces hansenii CBS767], gi\|49...	370.0	[0..3]	[322..2]
gi\|114189504, gi... - gi\|115433030\|ref\|XP_001216652.1\| plasma membrane iron permease [Aspergillus terreus NIH2624], gi\|114...	370.0	[0..1]	[323..1]
gi\|50845197 - gi\|50845197\|gb\|AAT84596.1\| high-affinity iron permease [Aspergillus fumigatus] gi\|129556362, gi... - gi\|146324022\|ref\|XP_747964.2\| high-affinity iron transporter FtrA [Aspergillus fumigatus Af293], gi\|... gi\|159126111 - gi\|159126111\|gb\|EDP51227.1\| high-affinity iron ion transporter FtrA [Aspergillus fumigatus A1163]	369.0	[0..1]	[349..1]

Back

Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDVFSVAI FFIVLRETLE ASIIVSVLMS FISQTLMDKD GNVTDPKLKR KFMLQVWIGS  60
   61 FTALFICLAI GGGFIGAFYA LDKDIWSGSE EIWEGVFSLI AVVLITVMGF AMLRVSHLQE 120
  121 KWRKKLMKSI ANRKAKGISN WGKKYSMFLL PFFTVLREGL EVVVFVGGVG LETPATAFPL 180
  181 PVICGLIVGC LIGYFIYRGG NVMNLQWFLI ASTCILYLIS AGLMSKATFY FEMNKWNHQT 240
  241 GGDAGELGD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [250-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPGSYPFKSA VWHVNYGNPE MNSNGGYMIF NAILGWNNTG TYGSILSYII YWLFVAFIMF  60
   61 LMWYKERRAA RLLIAKLGDK VVDLEAASSH TPVQSSSSED EFKINSPTDD KGDKAIDIVT 120
  121 EVRESSSPVE EHKDDKTVDV INEIRESH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits