YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC30D11.11
Organism:	Schizosaccharomyces pombe
Length:	442 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC30D11.11.

Description	E-value	Query Range	Subject Range
gi\|42546367, gi\|... - gi\|46108364\|ref\|XP_381240.1\| hypothetical protein FG01064.1 [Gibberella zeae PH-1], gi\|42546367\|gb\|E...	420.0	[0..8]	[440..23]
gi\|49095654, gi\|... - gi\|67537962\|ref\|XP_662755.1\| hypothetical protein AN5151.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	417.0	[0..6]	[433..21]
gi\|32420461, gi\|... - gi\|32420461\|ref\|XP_330674.1\| hypothetical protein [Neurospora crassa], gi\|28927145\|gb\|EAA36102.1\| hy... gi\|85117833 - gi\|85117833\|ref\|XP_965338.1\| hypothetical protein NCU03238 [Neurospora crassa OR74A]	403.0	[0..8]	[441..21]
gi\|38104333, gi\|... - gi\|39945394\|ref\|XP_362234.1\| hypothetical protein MGG_04679 [Magnaporthe grisea 70-15], gb\|EAA50920....	394.0	[0..2]	[431..29]
gi\|169768042 - gi\|169768042\|ref\|XP_001818492.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766347 - gi\|83766347\|dbj\|BAE56490.1\| unnamed protein product [Aspergillus oryzae]	389.0	[0..1]	[432..19]
gi\|114193817, gi... - gi\|115390777\|ref\|XP_001212893.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	379.0	[0..2]	[432..20]
gi\|66848242, gi\|... - gi\|70991521\|ref\|XP_750609.1\| IZH family channel protein (Izh3) [Aspergillus fumigatus Af293], gi\|668...	378.0	[0..2]	[433..19]
gi\|119178282, gi... - gi\|90299614\|gb\|EAS29245.1\| hypothetical protein CIMG_07991 [Coccidioides immitis RS], gi\|119178282\|r...	356.0	[0..6]	[442..21]
gi\|116182504, gi... - gi\|88186177\|gb\|EAQ93645.1\| hypothetical protein CHGG_01880 [Chaetomium globosum CBS 148.51], gi\|1161...	349.0	[0..8]	[432..25]
ADIPOR2 - adiponectin receptor 2 gi\|114642805 - gi\|114642805\|ref\|XP_508922.2\| PREDICTED: adiponectin receptor 2 [Pan troglodytes]	331.0	[0..126]	[436..57]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVKTFSST ETEGFKKRLL SRRHSSYQVR DEEDDVLEEF IVLKLDLFLT RLNHRMKRLE  60
   61 ELGLPNRKDA AAATYQFLAN LQASFLGTTI LGKTQVSFIL RRIEETYNDV LSACDTFPAK 120
  121 AQKALTFLEH HLRDLEDYAE KSKNNVETLM TDIKDVVEHA AKLGAQRLIT LEELPVQWHN 180
  181 NPYIIRGYRF YTSKRKCFRS ILSWH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	1ei3B
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [206-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NETFNIWTHL SAFIVFFAVL AYFYPSSSSW VSSNVSNRIV RIFFLLSAMK CLGCSVIWHT  60
   61 FSSLSNYKHM RCAACMDYVG ISALIAASII SVEYHAFVCQ GPLRFIFIAF TGTLGLIGIY 120
  121 TPWKKWFNEY KYRSVKIFF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [345-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVGLACSGLI PMITMFYIKG TRRTVKYLDP VFKSIFSYII GVLFYGLHIP ERFLPGKFDI  60
   61 IGNSHQIWHI AIIVGVAFHY TGVKRFETDY EAFSCGVL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits