YRC Public Data Repository - Protein Structure Prediction

Protein:	aps3
Organism:	Schizosaccharomyces pombe
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aps3.

Description	E-value	Query Range	Subject Range
gi\|74007149 - gi\|74007149\|ref\|XP_854230.1\| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B subuni...	180.0	[0..2]	[151..190]
gi\|89042891 - gi\|89042891\|ref\|XP_944818.1\| PREDICTED: similar to adaptor-related protein complex 1 sigma 2 subunit...	180.0	[0..2]	[165..48]
gi\|28949965 - gi\|28949965\|emb\|CAD70726.1\| probable clathrin assembly protein AP47 [Neurospora crassa]	172.0	[0..1]	[159..1]
gi\|42554497, gi\|... - gi\|46130854\|ref\|XP_389158.1\| hypothetical protein FG08982.1 [Gibberella zeae PH-1], gi\|42554497\|gb\|E...	172.0	[0..1]	[159..1]
gi\|119183349, gi... - gi\|90301509\|gb\|EAS31140.1\| hypothetical protein CIMG_06619 [Coccidioides immitis RS], gi\|119183349\|r...	171.0	[0..1]	[159..1]
gi\|78191071 - gi\|78191071\|gb\|ABB29860.1\| AP-1 mu subunit [Cryphonectria parasitica]	171.0	[0..1]	[159..1]
gi\|111060420, gi... - gi\|169615757\|ref\|XP_001801294.1\| hypothetical protein SNOG_11041 [Phaeosphaeria nodorum SN15], gi\|11...	169.0	[0..1]	[159..1]
gi\|70997882, gi\|... - gi\|70997882\|ref\|XP_753673.1\| AP-1 adaptor complex subunit mu [Aspergillus fumigatus Af293], gi\|66851... gi\|159126594 - gi\|159126594\|gb\|EDP51710.1\| AP-1 adaptor complex subunit mu, putative [Aspergillus fumigatus A1163]	169.0	[0..1]	[159..1]
gi\|114601211 - gi\|114601211\|ref\|XP_001148407.1\| PREDICTED: similar to clathrin coat assembly protein-like isoform 2...	168.0	[0..1]	[162..101]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYAVFIFNN KGKPRLTKFY TPIDESIQQK LIGDIYAAVS TRPPTACNFL ESNLIAGKNR  60
   61 IIYRQYATLY FVFVVDEGES ELGILDLIQV FVEALDRCFN NVCELDLVFK FQEIHAILAE 120
  121 VVSGGLVLET NLNEIVLAAQ NQMPKTKRSN AMPFSNTLSS FATRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	1w63Q
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits