| Protein: | chr3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 932 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chr3.
| Description | E-value | Query Range |
Subject Range |
|
|
483.0 | [0..514] | [931..58] |
|
|
478.0 | [0..520] | [931..401] |
|
|
433.0 | [0..530] | [931..72] |
|
|
426.0 | [0..560] | [930..36] |
|
|
419.0 | [0..564] | [931..40] |
|
|
419.0 | [0..564] | [931..44] |
|
|
416.0 | [0..564] | [931..40] |
|
|
411.0 | [0..551] | [931..41] |
|
|
405.0 | [0..587] | [930..24] |
|
|
404.0 | [0..587] | [930..24] |
|
Region A: Residues: [1-172] |
1 11 21 31 41 51
| | | | | |
1 MKDSHSSRRK YEKEKLVFAT NNGKRTEGTP AFLKSGNTAS SSSPTLQFRP TSRYPTLSHE 60
61 PVYTNVLDLS SRIDANRASI MSATMGTPPS ALKFSKKKIS RPVVSEDTFK DKLPRATIPV 120
121 KPEPQPQYKI PAAPAPTSKR VVNRGLKLNT NLRQASPILP SPSLKLDRQD AP
|
| Detection Method: |  |
| Confidence: | 0.983 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [173-306] |
1 11 21 31 41 51
| | | | | |
1 IQINHEQKED FLVSIPRPTP MTNLDDGKDE IGQPDPHRKY MAPPRVNSIS RVQRRMSYIP 60
61 YGGFDDFLDN YYKDDDTVLE DNQLKSNSRI ETLEEEDGAE SDSITNTVSN ASSDAEPAHR 120
121 HLGPVYENSG HLPS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [307-518] |
1 11 21 31 41 51
| | | | | |
1 KSHFSSTDSN TDSFGLESDE RSLPSVSNDL KSSETLKNPR NDDLLTLQQP PRYPHSQMVM 60
61 LPARSPVEVP APTFDRRNVS RNSNNNSPEG YDNNRTNPTV NNLPSYPTNL ARPKAIKPMP 120
121 TSIHGQTSPL SPIPPVHTTH GLVSDIRPLP SVSSPIMRAD STPISHNLAV TPSFSPIPQQ 180
181 SNKSIGNHKN TSVANVSSKV ANSKFERNIS MM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [519-618] |
1 11 21 31 41 51
| | | | | |
1 SNSNASSPAI FEVGAEAKEK TKDAIPCHPD DKLMIPSPKI VTHGDAMQEE QRLRQKSQIT 60
61 PDDEVELAKV YLNALETLEN KPSLAPDQAS YNTRINVYRT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [619-932] |
1 11 21 31 41 51
| | | | | |
1 RAVELLKKNA YPSKTQNTVP EALFLIGQFH SQGVLGFRRD LGKAFELYSL AAKKGHPLSN 60
61 YRVAVCLQTG TGVKPDTSKC VAIYKKAAEM DVVEAMFRIA LIYLNGLLGQ KRNISLGVQW 120
121 LERACKSKGP ESVRAMYELA KIYEQPDRYG VSATPERKFE LYKQSAVYGY AAAQCKLGEC 180
181 YEHGLLGCLA EPRRSIFWYT RAAEQDYGEA ELGLSGWYLT GSEGILPKNG EEALLWAHKA 240
241 ACKGLAKAQY AVGFMMEQGI GVAADPSSAH NWYIRAAKQG FPKAKKRLEE QALSSKQTHS 300
301 KAPKKKQQEQ CVVM
|
| Detection Method: | |
| Confidence: | 67.69897 |
| Match: | 1ouvA |
| Description: | Helicobacter cysteine rich protein C (HcpC) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.96958278583621 | bayes_pls_golite062009 |
| protein binding | 0.559882636047776 | bayes_pls_golite062009 |
