YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC24B11.08c
Organism:	Schizosaccharomyces pombe
Length:	390 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC24B11.08c.

Description	E-value	Query Range	Subject Range
ERGI3_DANRE - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1	505.0	[0..1]	[388..1]
ERGI3_XENTR - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 ...	491.0	[0..1]	[388..1]
gi\|28926610, gi\|... - gi\|32418506\|ref\|XP_329731.1\| hypothetical protein [Neurospora crassa], gi\|28926610\|gb\|EAA35579.1\| hy... gi\|85115136 - gi\|85115136\|ref\|XP_964815.1\| hypothetical protein NCU08607 [Neurospora crassa OR74A]	487.0	[0..1]	[389..1]
ERGIC3 - ERGIC and golgi 3	485.0	[0..1]	[388..1]
gi\|109092202 - gi\|109092202\|ref\|XP_001098982.1\| PREDICTED: serologically defined breast cancer antigen 84 isoform 3...	485.0	[0..1]	[388..1]
ERGI3_XENLA - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1	484.0	[0..1]	[388..1]
ERGI3_PONPY - Endoplasmic reticulum-Golgi intermediate compartment protein 3 - Pongo pygmaeus (Orangutan) ERGI3_PONAB - Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1	482.0	[0..1]	[388..1]
gi\|42546786, gi\|... - gi\|46105482\|ref\|XP_380545.1\| hypothetical protein FG00369.1 [Gibberella zeae PH-1], gi\|42546786\|gb\|E...	482.0	[0..1]	[389..1]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFRSPLRRF DAFQKTVEDA RIKTASGGLI TLVSGLIVIF IVLMEWINYR RVIAVHEIIV  60
   61 NPSHGDRMEI NFNITFPRIP CQILTVDVLD VSGEFQRDIH HTVSKTRLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSGEIISVDD LDIGNQQSIS DDGAAECGDC YGAADFAPED TPGCCNTCDA VRDAYGKAHW  60
   61 RIGDVDAFKQ CKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [183-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENFKELYEAQ KVEGCNLAGQ LSVNRMAGNF HIAPGRSTQN GNQHVHDTRD YINELDLH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [241-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMSHSIHHLS FGPPLDASVH YSNPLDGTVK KVSTADYRYE YFIKCVSYQF MPLSKSTLPI  60
   61 DTNKYAVTQH ERSIRGGREE KVPTHVNFHG GIPGVWFQFD ISPMRVIERQ VRGNTFGGFL 120
  121 SNVLALLGGC VTLASFVDRG YYEVQKLKKN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits