YRC Public Data Repository - Protein Structure Prediction

Protein:	sif3
Organism:	Schizosaccharomyces pombe
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sif3.

Description	E-value	Query Range	Subject Range
gi\|63054475 - gi\|63054475\|ref\|NP_592883.2\| hypothetical protein SPAC12G12.15 [Schizosaccharomyces pombe 972h-]	604.0	[0..1]	[505..1]
gi\|40739507, gi\|... - gi\|67540286\|ref\|XP_663917.1\| hypothetical protein AN6313.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	460.0	[0..2]	[459..391]
gi\|46124763, gi\|... - gi\|46124763\|ref\|XP_386935.1\| hypothetical protein FG06759.1 [Gibberella zeae PH-1], gi\|42554226\|gb\|E...	443.0	[0..3]	[459..15]
gi\|32414729, gi\|... - gi\|32414729\|ref\|XP_327844.1\| hypothetical protein [Neurospora crassa], gi\|28919978\|gb\|EAA29367.1\| sp... gi\|85090825 - gi\|85090825\|ref\|XP_958603.1\| sporulation protein RMD1 [Neurospora crassa OR74A]	442.0	[0..3]	[459..19]
gi\|116207758, gi... - gi\|88183769\|gb\|EAQ91237.1\| hypothetical protein CHGG_03172 [Chaetomium globosum CBS 148.51], gi\|1162...	440.0	[0..4]	[470..23]
gi\|45190603, gi\|... - gi\|45190603\|ref\|NP_984857.1\| AEL004Wp [Ashbya gossypii ATCC 10895], gi\|44983582\|gb\|AAS52681.1\| AEL00... gi\|44983582 - gi\|44983582\|gb\|AAS52681.1\| AEL004Wp [Ashbya gossypii ATCC 10895]	440.0	[0..20]	[459..40]
RMD1_YEAST - Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 RMD1 - Cytoplasmic protein required for sporulation gi\|190405021 - gi\|190405021\|gb\|EDV08288.1\| sporulation protein RMD1 [Saccharomyces cerevisiae RM11-1a] gi\|207346870 - gi\|207346870\|gb\|EDZ73232.1\| YDL001Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941989 - gi\|151941989\|gb\|EDN60345.1\| protein required for maturation and assembly of cytochrome oxidase subun...	424.0	[0..26]	[459..9]
gi\|83769752 - gi\|83769752\|dbj\|BAE59887.1\| unnamed protein product [Aspergillus oryzae] gi\|220694388, gi... - gi\|238496545\|ref\|XP_002379508.1\| YagE family protein [Aspergillus flavus NRRL3357], gi\|220694388\|gb\|... gi\|169774843 - gi\|169774843\|ref\|XP_001821889.1\| hypothetical protein [Aspergillus oryzae RIB40]	410.0	[0..2]	[459..22]
gi\|115383930, gi... - gi\|115383930\|ref\|XP_001208512.1\| sporulation protein RMD1 [Aspergillus terreus NIH2624], gi\|11419620...	408.0	[0..2]	[459..22]
gi\|38105752, gi\|... - gi\|39943310\|ref\|XP_361192.1\| hypothetical protein MGG_03735 [Magnaporthe grisea 70-15], gb\|EAA52140....	407.0	[0..36]	[441..55]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKDKLNLP PKRTINTRLS TPVHIPPPIN SESTRITPQH GSPPRFGDHR ISAAQGLFQR  60
   61 RRNARKIDHP LGWFLKNRHA AAHIPQRTTK TSQKLVLLPE NHAVNSFNEE ESNYEDLLTP 120
  121 SDAYNLIKLE NLPRDKREEL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [141-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFPRATAYCV CEAFQLPKVK HFLKHYHKVR AKKYDEVLYA VYHLPLVYGR SESCRVSSGP  60
   61 APDDMPSSAS NHNQKHLDSD KPDNENFDSH IISQLYRISE IFVFSYGVVV FWNFSLSQEK 120
  121 DILADLTFGG DNSLMVKPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [280-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEEECEIEDL HFHYAPNTKR PRIYNDMIHI PSADNKMKLA MSHALAQSVK LSRFELRTDV  60
   61 TMNSALFYPK KLALYGHLGL SRVEVVRMSG HLFQLRVDVN LISNILDTPD FLWDSEPLLL 120
  121 PLYTAFREYL EIGPRTNVLN RRCKVIFDML DIFGKSSADR KMNSITWIII ILISLFVIIF 180
  181 TSYCDSDGLI GNCVLLVYVD GLWSVKTNGF RQLSLFILSF SPQNISPFIN L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits