YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC12G12.12
Organism:	Schizosaccharomyces pombe
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC12G12.12.

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	174.0	[0..2]	[317..323]
gi\|42544808, gi\|... - gi\|46108454\|ref\|XP_381285.1\| hypothetical protein FG01109.1 [Gibberella zeae PH-1], gi\|42544808\|gb\|E...	166.0	[0..7]	[317..283]
gi\|85110407 - gi\|85110407\|ref\|XP_963444.1\| hypothetical protein NCU05453 [Neurospora crassa OR74A] gi\|32409655, gi\|... - gi\|32409655\|ref\|XP_325308.1\| related to SLY41 protein [MIPS] [Neurospora crassa], gi\|28925125\|gb\|EAA...	164.0	[0..3]	[322..134]
gi\|88176380, gi\|... - gi\|88176380\|gb\|EAQ83848.1\| hypothetical protein CHGG_10252 [Chaetomium globosum CBS 148.51], gi\|1162...	157.0	[0..3]	[322..141]
gi\|49093248, gi\|... - gi\|67526981\|ref\|XP_661552.1\| hypothetical protein AN3948.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	156.0	[0..3]	[320..129]
gi\|109470339 - gi\|109470339\|ref\|XP_001078382.1\| PREDICTED: similar to GDP-fucose transporter 1 isoform 1 [Rattus no...	155.0	[0..2]	[317..360]
gi\|113402542 - gi\|113402542\|ref\|XP_001128065.1\| PREDICTED: similar to solute carrier family 35, member E2 [Homo sap...	154.0	[0..1]	[318..339]
gi\|83767208 - gi\|83767208\|dbj\|BAE57347.1\| unnamed protein product [Aspergillus oryzae] gi\|169769759 - gi\|169769759\|ref\|XP_001819349.1\| hypothetical protein [Aspergillus oryzae RIB40]	154.0	[0..3]	[317..185]
gi\|111068282 - gi\|111068282\|gb\|EAT89402.1\| hypothetical protein SNOG_02671 [Phaeosphaeria nodorum SN15]	153.0	[0..3]	[320..212]

Back

Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPIIMLTS GVANTVLSKY QDSIAEESEP IKSMAVLQSL NIFLGEACLW FYVLYKRHSQ  60
   61 GPGYESLDHL PLKHKVFMAL PAIMDICGST LMNVGLLYTS ASIYQMTRGS LIIFVALFAT 120
  121 TLLKRTIGQL QWLSLSFVVL GVAIVGYSGS SSSIGSNPIL GITAVLIGQF FLATQFTIEE 180
  181 YILSFIQVDP SELVAYEGTY GVFFVLLGMI ISYYFIGSTT AGYHG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.1
Match:	2i68A
Description:	No description for 2i68A was found.

Predicted Domain #2

Region A:
Residues: [226-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WFDYSHVISR FNEVPALYVI SGVILVSIAF FNVSGLAITK LHSATTRSLL DIARTFGIWI  60
   61 IAMAMGMESF HLLQFLGFVL LIYGIFTYHS IIKFPLAES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits