YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC23D3.01
Organism:	Schizosaccharomyces pombe
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC23D3.01.

Description	E-value	Query Range	Subject Range
SPBC29A3.13 - PWWP domain protein PDP1_SCHPO - PWWP domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pdp1 PE=1...	201.0	[0..1]	[375..1]
gi\|45190343, gi\|... - gi\|45190343\|ref\|NP_984597.1\| AEL263Cp [Ashbya gossypii ATCC 10895], gi\|44983239\|gb\|AAS52421.1\| AEL26... gi\|44983239 - gi\|44983239\|gb\|AAS52421.1\| AEL263Cp [Ashbya gossypii ATCC 10895]	180.0	[0..58]	[401..3]
gi\|114619715, gi... - gi\|114619719\|ref\|XP_001170815.1\| PREDICTED: WHSC1L1 protein isoform 5 [Pan troglodytes], gi\|11461971...	155.0	[0..4]	[261..206]
gi\|92098122 - gi\|92098122\|gb\|AAI15007.1\| Wolf-Hirschhorn syndrome candidate 1-like 1 [Homo sapiens]	153.0	[0..4]	[261..206]
gi\|109086178 - gi\|109086178\|ref\|XP_001091062.1\| PREDICTED: similar to WHSC1L1 protein isoform long isoform 1 [Macac...	151.0	[0..4]	[261..206]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVARTRSQK RKLEEINNQK KIKTKKKATG QQTSNTKNLR DVKKKGKQLA YVPRTSPRKS  60
   61 YKNGEYVLAK MSSFPWWPAR VASQKSIPTE VRERLKRNFR MDNGIFVQFL PSRDYAIISS 120
  121 SNVLPLTVDE SRFILDHDLS TKYIQKTVGL IIASVKRKVS FSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	2gfuA
Description:	No description for 2gfuA was found.

Predicted Domain #2

Region A:
Residues: [164-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEEDEFEPEN TRKKLQKPIE KPKKEKIEAT PKIDGGKRLK NEKSSAEISQ TSKQRPSRRS  60
   61 ARVRMATDNA QKSPSPIPSP KKTAKKRVRF AGSLEELPKF SLEYQLAQPI STVDMYAQVH 120
  121 YIRFNTLLYY RYQLQEILLS YNHYPQESDM SHVHQILEMI ENFSAINSEL LESTKLYSLF 180
  181 TLLVKLSDIP LDEKYDFSSR FSTLLLQFQA FVQPKTMTSN VSTAPIGKNA QVNTEAARPS 240
  241 VITT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits