YRC Public Data Repository - Protein Structure Prediction

Protein:	atp10
Organism:	Schizosaccharomyces pombe
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp10.

Description	E-value	Query Range	Subject Range
gi\|38104073, gi\|... - gi\|39944942\|ref\|XP_362008.1\| hypothetical protein MGG_04453 [Magnaporthe grisea 70-15], gb\|EAA50694....	316.0	[0..26]	[264..174]
gi\|85118589 - gi\|85118589\|ref\|XP_965478.1\| hypothetical protein NCU02705 [Neurospora crassa OR74A] gi\|38567214, gi\|... - gi\|38567214\|emb\|CAE76506.1\| related to F1F0 ATPase complex assembly protein [Neurospora crassa], gi\|...	315.0	[0..42]	[264..100]
gi\|40746667, gi\|... - gi\|67519696\|ref\|XP_658834.1\| hypothetical protein AN1230.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	307.0	[0..31]	[264..80]
orf19.13731, orf... - orf19.6374 CGDID:CAL0001381 Assembly 19, Contig19-10247 (12069, 13199) CDS, translated using codon t... gi\|46437876, gi\|... - gi\|68479532\|ref\|XP_716130.1\| hypothetical protein CaO19.13731 [Candida albicans SC5314], gi\|68479365...	298.0	[0..17]	[264..108]
ATP10_ASHGO - Mitochondrial ATPase complex subunit ATP10 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC... ATP10_ASHGO - Mitochondrial ATPase complex subunit ATP10 OS=Ashbya gossypii GN=ATP10 PE=3 SV=1	290.0	[0..28]	[264..18]
gi\|116207034, gi... - gi\|88183407\|gb\|EAQ90875.1\| hypothetical protein CHGG_02810 [Chaetomium globosum CBS 148.51], gi\|1162...	287.0	[0..28]	[264..77]
gi\|114197187, gi... - gi\|115491399\|ref\|XP_001210327.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	283.0	[0..38]	[264..94]
gi\|83774048 - gi\|83774048\|dbj\|BAE64173.1\| unnamed protein product [Aspergillus oryzae] gi\|169781686 - gi\|169781686\|ref\|XP_001825306.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220693753, gi... - gi\|238498488\|ref\|XP_002380479.1\| F1F0 ATP synthase assembly protein Atp10, putative [Aspergillus fla...	275.0	[0..38]	[264..94]
ATP10 - Mitochondrial inner membrane protein required for assembly of the F0 sector of mitochondrial F1F0 AT... gi\|151940914 - gi\|151940914\|gb\|EDN59296.1\| ATP synthase [Saccharomyces cerevisiae YJM789] ATP10_YEAST - Mitochondrial ATPase complex subunit ATP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...	266.0	[0..18]	[261..9]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYNYLKNLV IPRLIVKHQF KLRSFSTKSL NDTKEKAPSA LIPVGLLVKP TMLSEVQKPT  60
   61 LWEKLTKPAS TSSPEQRQKE LLNEMKRSTI QDFNEVRRFN GKLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSPPRLFKEK SALWMYNFHG KSLRNQYKEL YKDWQGSPFF FALFSNAFGE NQCRNWIQHL  60
   61 APFDYLPVRY ANVQSNLIKY WLQKIFIGKV KRSIPEKCWN EYITAYDNKF SFPEIGWNNK 120
  121 LVGNVYLIDD SCKIRWLGTG DPTNVEIENL KTAIKFLVNK NVG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	2h30A
Description:	No description for 2h30A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits