YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC16C9.02c
Organism:	Schizosaccharomyces pombe
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC16C9.02c.

Description	E-value	Query Range	Subject Range
gi\|56750628, gi\|... - gi\|56750628\|ref\|YP_171329.1\| 5'-methylthioadenosine phosphorylase [Synechococcus elongatus PCC 6301]... gi\|46129569, gi\|... - gi\|81299732\|ref\|YP_399940.1\| 5'-methylthioadenosine phosphorylase [Synechococcus elongatus PCC 7942]...	343.0	[0..7]	[300..3]
gi\|114623942 - gi\|114623942\|ref\|XP_001153022.1\| PREDICTED: similar to Chain A, Structure Of Human 5-Deoxy-5-Methylt... MTAP - methylthioadenosine phosphorylase MTAP_MACMU - S-methyl-5'-thioadenosine phosphorylase OS=Macaca mulatta GN=MTAP PE=3 SV=1 CCDS6509.1_1 - null	342.0	[0..8]	[286..10]
gi\|114623944 - gi\|114623944\|ref\|XP_001152767.1\| PREDICTED: similar to MTAP isoform 1 [Pan troglodytes]	340.0	[0..9]	[286..28]
MTAP_MOUSE - S-methyl-5'-thioadenosine phosphorylase OS=Mus musculus GN=Mtap PE=1 SV=1	340.0	[0..8]	[287..10]
gi\|67857056, gi\|... - gi\|67920939\|ref\|ZP_00514458.1\| Methylthioadenosine phosphorylase [Crocosphaera watsonii WH 8501], gi...	340.0	[0..4]	[300..1]
gi\|23124441, gi\|... - gi\|23124441\|ref\|ZP_00106430.1\| COG0005: Purine nucleoside phosphorylase [Nostoc punctiforme PCC 7310...	339.0	[0..7]	[300..3]

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Predicted Domain #1

Region A:
Residues: [1-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKQAEPILL GVIGGSGFYD LPGFDIVESV NPITPWGYPA SPISIARTTS GFLIAFLARH  60
   61 GVGHIYTPTE VPSRANIAAL KSLGVLAIVS FSAVGSLRED IPPEDFVLPT QIIDRTLCAR 120
  121 PNTFFESGCV AHVSFGDPFD QDLYEILSSC GSNLKNGSKL HTKRKGDDLT VVCMEGPAFS 180
  181 TRAESNLYRS WGASIINMSV IPEAKLAREA EIAYQMVCMA TDYDCWRMNE EPVTVETVME 240
  241 HISNNKDNAK IFLLEAVKKL EAPLLQGFLG RNLRESVQNG IQTNHKHRNP DAIRRLQFLF 300
  301 PNLTIPH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.154902
Match:	1cb0A
Description:	5'-deoxy-5'-methylthioadenosine phosphorylase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits