YRC Public Data Repository - Protein Structure Prediction

Protein:	atp20
Organism:	Schizosaccharomyces pombe
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp20.

Description	E-value	Query Range	Subject Range
gi\|12842190, gi\|... - gi\|12842190\|dbj\|BAB25507.1\| unnamed protein product [Mus musculus], gi\|12841973\|dbj\|BAB25423.1\| unna...	139.0	[0..26]	[117..1]
gi\|47058994, gi\|... - gi\|47058994\|ref\|NP_997681.1\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G [Rat...	133.0	[0..26]	[117..1]
ATP5L_BOVIN - ATP synthase subunit g, mitochondrial OS=Bos taurus GN=ATP5L PE=1 SV=3	131.0	[0..32]	[117..3]
gi\|49086002, gi\|... - gi\|67517341\|ref\|XP_658547.1\| hypothetical protein AN0943.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	131.0	[0..3]	[117..37]
gi\|42545543, gi\|... - gi\|46107546\|ref\|XP_380832.1\| hypothetical protein FG00656.1 [Gibberella zeae PH-1], gi\|42545543\|gb\|E...	131.0	[0..3]	[117..32]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSTSRIISR INYNFLRKSH YSTKTVAEQA KGRFTPLIQK LSAVQQPIMY WANVSKELVQ  60
   61 QVYHSQKIAP PSNTHSPFLF WKSQSSEAWG RNFFIAVEIV GIFCAGQMVG RRKITPYH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.060481
Match:	PF04718.6
Description:	No description for PF04718.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits