YRC Public Data Repository - Protein Structure Prediction

Protein:	atf31
Organism:	Schizosaccharomyces pombe
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atf31.

Description	E-value	Query Range	Subject Range
gi\|114581857 - gi\|114581857\|ref\|XP_001152057.1\| PREDICTED: chimerin (chimaerin) 1 isoform 6 [Pan troglodytes]	121.0	[0..26]	[203..254]
gi\|2801478, gi\|9... - gi\|9626985\|ref\|NP_056890.1\| gag polyprotein [Murine osteosarcoma virus], gi\|2801478\|gb\|AAC82572.1\| p... gi\|332196 - gi\|332196\|gb\|AAA46573.1\| gag-fos fusion protein [FBR murine osteosarcoma virus]	119.0	[0..7]	[199..307]
FOSX_MSVFR - Transforming protein v-Fos/v-Fox OS=FBR murine osteosarcoma virus GN=FOS-FOX PE=3 SV=1	118.0	[0..11]	[199..1]
FOS_CHICK - Proto-oncogene c-Fos OS=Gallus gallus GN=FOS PE=1 SV=1	115.0	[0..4]	[204..18]
FOS_RAT - Proto-oncogene c-Fos OS=Rattus norvegicus GN=Fos PE=1 SV=1 gi\|55934 - gi\|55934\|emb\|CAA29937.1\| unnamed protein product [Rattus rattus]	114.0	[0..10]	[209..24]
gi\|4581531, gi\|1... - gi\|4581531\|emb\|CAB40144.1\| c-Fos protein [Sus scrofa], gi\|178057282\|ref\|NP_001116585.1\| v-fos FBJ mu...	114.0	[0..10]	[209..24]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYETNTPTE ESIIPKHEDG EEYNSIYLSR FEKDISISQT LDFSQFMQTQ ILLTAKRKAL  60
   61 ELGDDRSPIN NDPYNIRRSD FDELSEYTAS KSPSIISEAS HNSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRELDDSGDE NTSKLTGTKQ SMLKARNRQA AQKCRIKKKK YLQTLQDQVN YYTSENKELL  60
   61 QSANDLREEI IKLRTLVFAH RDCPVSKACS KALFLMGKEK PLTPP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits