YRC Public Data Repository - Protein Structure Prediction

Protein:	uba3
Organism:	Schizosaccharomyces pombe
Length:	444 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for uba3.

Description	E-value	Query Range	Subject Range
gi\|50795135 - gi\|50795135\|ref\|XP_423750.1\| PREDICTED: similar to ubiquitin-activating enzyme E1C isoform 1; Nedd8-...	359.0	[0..13]	[441..86]
gi\|62738701, gi\|... - gi\|62738703\|pdb\|1YOV\|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The Refined Struct...	358.0	[0..13]	[441..18]
gi\|3342564, gi\|2... - gi\|3599672\|dbj\|BAA33144.1\| Nedd8-activating enzyme hUba3 [Homo sapiens], gi\|3342564\|gb\|AAC27648.1\| U... gi\|114587783 - gi\|114587783\|ref\|XP_001137269.1\| PREDICTED: ubiquitin-activating enzyme E1C isoform 5 [Pan troglodyt... gi\|109036783, gi... - gi\|109036786\|ref\|XP_001088381.1\| PREDICTED: similar to ubiquitin-activating enzyme E1C isoform 1 iso...	357.0	[0..13]	[441..16]
gi\|73984888 - gi\|73984888\|ref\|XP_864319.1\| PREDICTED: similar to ubiquitin-activating enzyme E1C isoform 1 isoform...	357.0	[0..13]	[441..37]
gi\|74177635, gi\|... - gi\|74177635\|dbj\|BAE38920.1\| unnamed protein product [Mus musculus], gi\|162287057\|ref\|NP_001104576.1\|...	357.0	[0..13]	[441..23]

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Predicted Domain #1

Region A:
Residues: [1-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSDVCKAG SHRHSGWIQS LKKPGPFNLD APENPEETLK SAFSSKILII GAGGLGCEIL  60
   61 KDLALSGFRD LSVIDMDTID ITNLNRQFLF NESNIDEPKA NVAASMIMKR IPSTVVTPFY 120
  121 GKIQDKTIEF YKEFKLIICG LDSVEARRWI NSTLVAIAKT GDLIPLVDGG SEGLKGQARV 180
  181 IIPTITSCYE CSLDMLTPKI SYPICTLANT PRLPEHCVEW AYLLEWPRVF LNASVDSFSK 240
  241 QEVFEPLDGK NSNFEPDNIR HIDWLVKRSI ERANKFQIPS SSINRFFVQG IVKRIIPAVA 300
  301 STNAIIAASC CNEALKILTE SNPFLDNYMM YVGEDGAYTY TFNLEKRSDC PVCGVLSEVY 360
  361 DISASSTVTL KDILNHYSKS YNLQNPSVST AAGTPLYLAS PPALQVATSK NLSQPILSIT 420
  421 SVDVNLVITD KNLSTSLSVQ LREC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2nvuB
Description:	No description for 2nvuB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits