YRC Public Data Repository - Protein Structure Prediction

Protein:	dcc1
Organism:	Schizosaccharomyces pombe
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dcc1.

Description	E-value	Query Range	Subject Range
gi\|50285507, gi\|... - gi\|50285507\|ref\|XP_445182.1\| unnamed protein product [Candida glabrata], gi\|49524485\|emb\|CAG58082.1\|... gi\|49524485 - gi\|49524485\|emb\|CAG58082.1\| unnamed protein product [Candida glabrata]	48.0	[0..22]	[263..13]
gi\|91086115 - gi\|91086115\|ref\|XP_968072.1\| PREDICTED: similar to CG11788 CG11788-PA [Tribolium castaneum]	47.0	[0..24]	[263..45]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANEERCIL LKYPHPSSDI SSEYLLLELD DDLLKTLEEN PEEEIVFKSD FDKKASVLCT  60
   61 SDKTYAVRQV VQSNSYLLFD ELSPTDWVLN DTCYSFLEVE RIYGFIFSDD KISYWDEDSV 120
  121 ELKPISLTKD QFIRSVPASR NEVDSFLQKN FFMVKNEFLY RLSPSYICSI IDWIFVIAQQ 180
  181 LHIDFASFEF KILKKPAMDD EFDWDSVICV LESISSPIKD NV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [223-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPKKFNIDLE LTTFWYGRFL LEGINSISSD EFIQLWDNRL PYPCKGLPSL NLLKVGHFSQ  60
   61 LMLKLFRVII FTIPQIRFSI YQEISYRENQ VGGFNLCFNL SRNGYMKNFG VSLKILPCRN 120
  121 QELKLLY