YRC Public Data Repository - Protein Structure Prediction

Protein:	sft1
Organism:	Schizosaccharomyces pombe
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sft1.

Description	E-value	Query Range	Subject Range
BET1_RAT - BET1 homolog OS=Rattus norvegicus GN=Bet1 PE=1 SV=1	103.0	[0..2]	[89..29]
BET1_MOUSE - BET1 homolog OS=Mus musculus GN=Bet1 PE=1 SV=1	102.0	[0..2]	[89..29]
CE37577 - status:Confirmed UniProt:Q6R1Z5 protein_id:AAU87809.1	102.0	[0..1]	[88..18]
gi\|148877424, gi... - gi\|76670646\|ref\|XP_873653.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin...	101.0	[0..2]	[89..29]
gi\|39588471, gi\|... - gi\|39588471\|emb\|CAE72822.1\| Hypothetical protein CBG20103 [Caenorhabditis briggsae], gi\|187023847\|em... gi\|157757477 - gi\|157757477\|ref\|XP_001671082.1\| Hypothetical protein CBG20103 [Caenorhabditis briggsae AF16]	101.0	[0..1]	[88..18]
gi\|57095986 - gi\|57095986\|ref\|XP_532463.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin...	101.0	[0..2]	[89..29]
gi\|109067485 - gi\|109067485\|ref\|XP_001098109.1\| PREDICTED: BET1 homolog (S. cerevisiae) isoform 2 [Macaca mulatta]	100.0	[0..2]	[89..24]
gi\|55628902 - gi\|55628902\|ref\|XP_519206.1\| PREDICTED: similar to BET1 homolog (Golgi vesicular membrane traffickin... gi\|60654967, gi\|... - gi\|60654967\|gb\|AAX32047.1\| BET1-like [synthetic construct], gi\|60654965\|gb\|AAX32046.1\| BET1-like [sy... BET1 - blocked early in transport 1 homolog (S. cerevisiae)	100.0	[0..2]	[89..29]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDQNERRLE TLSGQVSSLK NVTYDIYSRA NDYTRIDRAT ESFSGLSNSV KKSTENFFRV  60
   61 VRSAGRRRIM TMVLAIVGSI LIIYYASKWF F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	2npsD
Description:	No description for 2npsD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits