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View Structure Prediction Details

Protein: mrp20
Organism: Schizosaccharomyces pombe
Length: 161 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrp20.

Description E-value Query
Range		 Subject
Range
gi|76613395 - gi|76613395|ref|XP_871507.1| PREDICTED: similar to 60S ribosomal protein L23a [Bos taurus]
 142.0 [0..3] [100..280]
gi|114653939 - gi|114653939|ref|XP_001144048.1| PREDICTED: similar to Rpl23a protein [Pan troglodytes]
 123.0 [0..5] [100..38]
gi|50758228 - gi|50758228|ref|XP_415820.1| PREDICTED: similar to 60S ribosomal protein L23a [Gallus gallus]
 122.0 [0..3] [100..410]
gi|11095761 - gi|11095761|gb|AAG30009.1|AF281334_1 60S ribosomal protein [Oncorhynchus mykiss]
 115.0 [0..3] [100..10]
gi|109113784 - gi|109113784|ref|XP_001109660.1| PREDICTED: similar to 60S ribosomal protein L23a isoform 1 [Macaca ...
 115.0 [0..3] [100..70]
RL23_BRUMB - 50S ribosomal protein L23 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplW PE=3 SV=1
RL23_BRUME - 50S ribosomal protein L23 OS=Brucella melitensis GN=rplW PE=3 SV=1
RL23_BRUME - 50S ribosomal protein L23 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN...
 114.0 [0..1] [95..1]
gi|94365736 - gi|94365736|ref|XP_993857.1| PREDICTED: similar to 60S ribosomal protein L23a [Mus musculus]
 114.0 [0..3] [100..74]
RL23_CHESB - 50S ribosomal protein L23 OS=Chelativorans sp. (strain BNC1) GN=rplW PE=3 SV=1
 114.0 [0..1] [95..1]

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Predicted Domain #1
Region A:
Residues: [1-161] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIAGKRLV YFPNITFTLC RGLNLQPKFA VFRVPLHVNK FDVRDYLQHV YNLKVVSVKS  60
   61 RIYQGKLFRN QLGQVKRPQS EKRVIVEMEE PFVYPNAPND LKDWQEGELL PDGSNVKTLS 120
  121 RYPKVLEQVD MKRVNEELSK LQDKQILESQ QKIARLLKKK Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1nkwR
Description: 50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.49719655437057 bayes_pls_golite062009
structural molecule activity 8.91971353502188 bayes_pls_golite062009
RNA binding 2.08123706428867 bayes_pls_golite062009
nucleic acid binding 1.05505904516672 bayes_pls_golite062009
binding 0.810197411226908 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle