YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl11
Organism:	Schizosaccharomyces pombe
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl11.

Description	E-value	Query Range	Subject Range
gi\|48765753 - ref\|ZP_00270303.1\| COG0244: Ribosomal protein L10 [Rhodospirillum rubrum] RL10_RHORT - 50S ribosomal protein L10 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 43...	161.0	[0..17]	[216..2]
gi\|113875391, gi... - gi\|150396197\|ref\|YP_001326664.1\| 50S ribosomal protein L10 [Sinorhizobium medicae WSM419], gi\|150027...	160.0	[0..2]	[215..11]
gi\|68245303, gi\|... - gi\|69260659\|ref\|ZP_00608127.1\| Ribosomal protein L10 [Magnetococcus sp. MC-1], gi\|68245303\|gb\|EAN274...	159.0	[0..19]	[215..4]
RL10_LACS1 - 50S ribosomal protein L10 OS=Lactobacillus salivarius (strain UCC118) GN=rplJ PE=3 SV=1 gi\|227891218, gi... - gi\|227891218\|ref\|ZP_04009023.1\| 50S ribosomal protein L10 [Lactobacillus salivarius ATCC 11741], gi\|...	156.0	[0..14]	[204..2]
gi\|229329198, gi... - gi\|229499919\|ref\|ZP_04393596.1\| ribosomal protein L10 [Geobacillus sp. Y412MC52], gi\|229329198\|gb\|EE... gi\|220706737, gi... - gi\|221089311\|ref\|ZP_03558831.1\| ribosomal protein L10 [Geobacillus sp. Y412MC61], gi\|220706737\|gb\|EE... RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus (strain HTA426) GN=rplJ PE=3 SV=1 RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus GN=rplJ PE=3 SV=1	156.0	[0..18]	[204..5]
gi\|90417772, gi\|... - gi\|90417772\|ref\|ZP_01225684.1\| ribosomal protein L10 [Aurantimonas sp. SI85-9A1], gi\|90337444\|gb\|EAS... gi\|90417772, gi\|... - gi\|90417772\|ref\|ZP_01225684.1\| ribosomal protein L10 [Aurantimonas sp. SI85-9A1], gi\|90337444\|gb\|EAS...	155.0	[0..18]	[215..3]
RL10_RHIME - 50S ribosomal protein L10 OS=Rhizobium meliloti (strain 1021) GN=rplJ PE=3 SV=1 RL10_RHIME - 50S ribosomal protein L10 OS=Rhizobium meliloti GN=rplJ PE=3 SV=1	153.0	[0..18]	[215..3]
gi\|25525751 - gi\|25525751\|pir\|\|AE3345 LSU ribosomal protein L10P [imported] - Brucella melitensis (strain 16M) gi\|17982684, gi\|... - gi\|17987030\|ref\|NP_539664.1\| 50S ribosomal protein L10 [Brucella melitensis 16M], gi\|17982684\|gb\|AAL...	153.0	[0..9]	[215..30]
RL10_LACSS - 50S ribosomal protein L10 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplJ PE=3 SV=1	153.0	[0..17]	[204..5]
gi\|50843340, gi\|... - gi\|50843340\|ref\|YP_056567.1\| 50S ribosomal protein L10 [Propionibacterium acnes KPA171202], gi\|50840...	153.0	[0..18]	[215..42]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCSVAVRAS SIYVKNPQLR KSFLHSNYVQ LIQESPNFLI LQHNNLLPRE AKSLRTELKA  60
   61 KVPGSKLQVI RGSIFHHALK VYESIDRLSN GCVDMQKVNL IETHKKAQKI KLDIDNLFVG 120
  121 PLAIFTLGPK LSPEAIRGFM SVLKGYQNKI LLLGIRAESK GMDPFEVENL SKIPSLEFLQ 180
  181 SSLLSVLSSP ASQLRRILDL SKANVAYTLE RREPSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.045757
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	0.883379158418688	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: