YRC Public Data Repository - Protein Structure Prediction

Protein:	trm112
Organism:	Schizosaccharomyces pombe
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trm112.

Description	E-value	Query Range	Subject Range
tr\|G3I886\|G3I886... - TRM112-like protein OS=Cricetulus griseus GN=I79_019749 PE=4 SV=1 gi\|27661288, gi\|... - gi\|27661288\|ref\|XP_215167.1\| PREDICTED: similar to UPF0315 protein [Rattus norvegicus], gi\|197246788...	190.0	[0..1]	[125..1]
TR112_MOUSE - Multifunctional methyltransferase subunit TRM112-like protein OS=Mus musculus GN=Trmt112 PE=1 SV=1	190.0	[0..1]	[125..1]
TR112_BOVIN - Multifunctional methyltransferase subunit TRM112-like protein OS=Bos taurus GN=TRMT112 PE=2 SV=1	186.0	[0..1]	[125..1]
gi\|57099691 - gi\|57099691\|ref\|XP_533242.1\| PREDICTED: similar to UPF0315 protein [Canis familiaris]	186.0	[0..1]	[125..1]
gi\|47225269 - gi\|47225269\|emb\|CAG09769.1\| unnamed protein product [Tetraodon nigroviridis]	184.0	[0..1]	[125..1]
gi\|70991349, gi\|... - gi\|70991349\|ref\|XP_750523.1\| adoMet-dependent tRNA methyltransferase (MTase) complex subunit Trm112 ... gi\|159124079 - gi\|159124079\|gb\|EDP49197.1\| adoMet-dependent tRNA methyltransferase (MTase) complex subunit [Aspergi...	182.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLTANFLN CSNKKCTSSP EAFPLDVVDA KLAIQQLELK PEFLIGIMPR IDWNALLKTT  60
   61 RQLGNYSLPD EKPDLVDDSD EVLLKSLHNV LLETEITEGK MVCGNCGHVY PIFEGIPNML 120
  121 LSESEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2j6aA
Description:	No description for 2j6aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits