YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPAC18B11.03c
Organism: Schizosaccharomyces pombe
Length: 440 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC18B11.03c.

Description E-value Query
Range
Subject
Range
gi|67920612, gi|... - gi|67920612|ref|ZP_00514132.1| Amino acid adenylation [Crocosphaera watsonii WH 8501], gi|67858096|g...
385.0 [0..1] [439..78]
gi|27817223 - gi|27817223|gb|AAO23334.1| NcpB [Nostoc sp. ATCC 53789]
384.0 [0..1] [439..1114]
LGRC_BREPA - Linear gramicidin synthase subunit C OS=Brevibacillus parabrevis GN=lgrC PE=3 SV=1
gi|42820780 - gi|42820780|emb|CAD92851.1| nonribosomal peptide synthetase [Brevibacillus brevis]
384.0 [0..1] [439..3654]
gi|23125759 - gi|23125759|ref|ZP_00107678.1| COG1020: Non-ribosomal peptide synthetase modules and related protein...
381.0 [0..1] [437..3827]
gi|6563397 - gi|6563397|gb|AAF15891.2|AF204805_1 NosA [Nostoc sp. GSV224]
378.0 [0..1] [439..1099]

Back

Predicted Domain #1
Region A:
Residues: [1-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGRLEIYS VKRNVLNMFS IVIVSATYSI SLDSTVLYPA VYHAIVNQPM LGARIHNCHS  60
   61 KIPIVKKLKT IDLDKVVKYA DDQKVDSFCN NALQNFKLCY DDETLPLWMV YVLNDKSELV 120
  121 FIYDHSLFDG GSGPLFHKYV LEGLQMSKTN FSSSTVPVSE LPLPKNLEKL IDVHPSWFCL 180
  181 MKALWTNSGL PFSKGFRSPS YKGHAPVRPF SSHTIFFSIS NAVVKNIKQL SKNIDASFTS 240
  241 IFYSVFMLSI YYAIAKNGKV NLDMLIDVNA RRFLPVAKQT MGNYVFSYVH HLNGFQPSQR 300
  301 QEDYKHTMVD LATEFSHRLK AALSNPREMS QQIGLLSYID IEDYLLKSCE KTRGNTAEIS 360
  361 NLGYFSFPAD SSVKIKNMAF AQPCSSLSAP FVLNVITVAD GPCSFSLSIF DDGNTEQTHE 420
  421 LAIKIRDKFL SILEKVSMNS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.39794
Match: 1l5aA
Description: VibH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity, transferring acyl groups 5.20837958885291 bayes_pls_golite062009
acetyltransferase activity 4.46817842384665 bayes_pls_golite062009
acyltransferase activity 4.20564954372416 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 4.14769933430026 bayes_pls_golite062009
transferase activity 2.93674646682436 bayes_pls_golite062009
catalytic activity 1.51562638409295 bayes_pls_golite062009
S-acyltransferase activity 1.04255330579864 bayes_pls_golite062009
palmitoyltransferase activity 0.928432060614611 bayes_pls_golite062009
binding 0.836048975173062 bayes_pls_golite062009
dihydrolipoamide S-acyltransferase activity 0.160679029697485 bayes_pls_golite062009
protein binding 0.0881886723592781 bayes_pls_golite062009
carnitine O-acyltransferase activity 0.0338935914141734 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle