YRC Public Data Repository - Protein Structure Prediction

Protein:	rsm24
Organism:	Schizosaccharomyces pombe
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsm24.

Description	E-value	Query Range	Subject Range
gi\|32405264, gi\|... - gi\|7899415\|emb\|CAB91705.1\| conserved hypothetical protein [Neurospora crassa], gi\|32405264\|ref\|XP_32... gi\|85085763 - gi\|85085763\|ref\|XP_957565.1\| hypothetical protein ( hypothetical protein B23L21.370 [imported] - Neu...	270.0	[0..61]	[250..141]
gi\|38111318, gi\|... - gi\|39971911\|ref\|XP_367346.1\| hypothetical protein MGG_07271 [Magnaporthe grisea 70-15], gb\|EAA56916....	264.0	[0..61]	[251..153]
gi\|46136885, gi\|... - gi\|46136885\|ref\|XP_390134.1\| hypothetical protein FG09958.1 [Gibberella zeae PH-1], gi\|42544853\|gb\|E...	252.0	[0..41]	[254..133]
gi\|71023615, gi\|... - gi\|71023615\|ref\|XP_762037.1\| hypothetical protein UM05890.1 [Ustilago maydis 521], ref\|XP_403505.1\| ...	248.0	[0..29]	[225..31]
gi\|88177170, gi\|... - gi\|88177170\|gb\|EAQ84638.1\| hypothetical protein CHGG_08652 [Chaetomium globosum CBS 148.51], gi\|1162...	244.0	[0..56]	[255..142]
gi\|45200957, gi\|... - gi\|45200957\|ref\|NP_986527.1\| AGL140Cp [Ashbya gossypii ATCC 10895], gi\|44985727\|gb\|AAS54351.1\| AGL14... gi\|44985727 - gi\|44985727\|gb\|AAS54351.1\| AGL140Cp [Ashbya gossypii ATCC 10895]	239.0	[0..60]	[246..114]
gi\|49088562, gi\|... - gi\|67522995\|ref\|XP_659558.1\| hypothetical protein AN1954.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	237.0	[0..53]	[253..137]
gi\|207346629 - gi\|207346629\|gb\|EDZ73072.1\| YDR175Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404870 - gi\|190404870\|gb\|EDV08137.1\| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae... RSM24 - Mitochondrial ribosomal protein of the small subunit RT24_YEAST - 37S ribosomal protein S24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	235.0	[0..67]	[247..135]
gi\|70993286, gi\|... - gi\|70993286\|ref\|XP_751490.1\| 37S ribosomal protein Rsm24 [Aspergillus fumigatus Af293], gi\|66849124\|... gi\|159125576 - gi\|159125576\|gb\|EDP50693.1\| 37S ribosomal protein Rsm24, putative [Aspergillus fumigatus A1163]	214.0	[0..71]	[257..157]
gi\|115389792, gi... - gi\|115389792\|ref\|XP_001212401.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	211.0	[0..43]	[251..127]

Back

Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNPLLSLL KADAIFLGQL SKSSFCATSR AFSVFYFTRF KRSAYVSAPF GIEPHDEKEL  60
   61 KTIDDNVHSN NLSWQKIQEH EVIRELYRKA AYELPGLTPY TQSFKKPAD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.634	a.29.8	Description not found.
View	Download	0.617	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain
View	Download	0.508	a.7.16	Description not found.
View	Download	0.499	d.52.2	GMP synthetase C-terminal dimerisation domain
View	Download	0.499	a.246.1	Description not found.
View	Download	0.492	d.52.2	GMP synthetase C-terminal dimerisation domain
View	Download	0.352	a.7.6	Ribosomal protein S20
View	Download	0.351	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.325	a.4.5	"Winged helix" DNA-binding domain

Predicted Domain #2

Region A:
Residues: [110-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQIFRFESDV QMSSFEKMNP KVVVTFKVTN IPLLEEKQRH VLRLLVGPRY NPEEDLVRIS  60
   61 SDKYSSALQN KYHLIKILTS LIEESKRNAE KFSHVPLNTG HWKYKKCDKR MPQEWLADAT 120
  121 TLTSKKKTTI GKQSHNTVLE RESIATTDE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	1j26A
Description:	Solution structure of a putative peptidyl-tRNA hydrolase domain in a mouse hypothetical protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits