YRC Public Data Repository - Protein Structure Prediction

Protein:	vps26
Organism:	Schizosaccharomyces pombe
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps26.

Description	E-value	Query Range	Subject Range
gi\|157104579, gi... - gi\|157104579\|ref\|XP_001648475.1\| vacuolar protein sorting 26, vps26 [Aedes aegypti], gi\|108869177\|gb...	495.0	[0..5]	[296..15]
gi\|50749300 - gi\|50749300\|ref\|XP_421577.1\| PREDICTED: similar to embryogenesis protein H beta 58 homolog - chicken...	488.0	[0..4]	[296..62]
gi\|66500087 - gi\|66500087\|ref\|XP_396685.2\| PREDICTED: similar to Vacuolar protein sorting 26 homolog (VPS26 protei...	487.0	[0..1]	[296..1]
gi\|159125451 - gi\|159125451\|gb\|EDP50568.1\| Vacuolar protein sorting-associated protein 26, putative [Aspergillus fu... gi\|70993556, gi\|... - gi\|70993556\|ref\|XP_751625.1\| Vacuolar protein sorting-associated protein 26 [Aspergillus fumigatus A...	486.0	[0..2]	[296..3]
Vps26-PA - The gene Vacuolar protein sorting 26 is referred to in FlyBase by the symbol Dmel\Vps26 (CG14804, FB...	485.0	[0..1]	[296..1]
gi\|73952807 - gi\|73952807\|ref\|XP_536375.2\| PREDICTED: similar to vacuolar protein sorting 26 isoform 1 [Canis fami...	485.0	[0..4]	[296..40]
gi\|88183390, gi\|... - gi\|88183390\|gb\|EAQ90858.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11620...	484.0	[0..1]	[296..1]
VP26B_DANRE - Vacuolar protein sorting-associated protein 26B OS=Danio rerio GN=vps26b PE=2 SV=1	484.0	[0..1]	[295..1]
gi\|28926931, gi\|... - gi\|32423003\|ref\|XP_331942.1\| hypothetical protein [Neurospora crassa], gi\|28926931\|gb\|EAA35892.1\| hy... gi\|85116824 - gi\|85116824\|ref\|XP_965128.1\| hypothetical protein [Neurospora crassa OR74A]	483.0	[0..1]	[296..1]

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Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYFFKSPID VDLHLDNEEE RTFVDYEFEQ GRKDKAPIYE SDETVKGTVM IRLKDGRKLD  60
   61 HDGVKIEFIG QIENTYDKGN IHEFTRSVQE LASPGEMRHA QMFEFEFKHV DKPYESYIGK 120
  121 NVKLRYICRV TVSRKMKDVI REKDLWVYRF ENEPETNSLI RMDVGIDECL HIEFEYSKNK 180
  181 YHLKDVIIGK IYFILVRIKV QRMEVSIIRR ETIGTSPNQY SNSETITRFQ IMDGNPNRGE 240
  241 TIPLRMFLNG YALTPTFRDV NKKFSVRYYL SLILVDEDQR RYFKQSEITL WRRRDEHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	137.0
Match:	2fauA
Description:	No description for 2fauA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits