YRC Public Data Repository - Protein Structure Prediction

Protein:	vma3
Organism:	Schizosaccharomyces pombe
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vma3.

Description	E-value	Query Range	Subject Range
gi\|52789283 - gi\|52789283\|gb\|AAH83129.1\| Atp6v0c protein [Mus musculus]	182.0	[0..7]	[154..49]
gi\|109127279 - gi\|109127279\|ref\|XP_001085529.1\| PREDICTED: similar to Vacuolar ATP synthase 16 kDa proteolipid subu...	182.0	[0..25]	[154..288]
gi\|58261016, gi\|... - gi\|58261016\|ref\|XP_567918.1\| hydrogen ion transporter [Cryptococcus neoformans var. neoformans JEC21...	175.0	[0..4]	[161..29]
gi\|49656538, gi\|... - gi\|50424561\|ref\|XP_460869.1\| hypothetical protein DEHA0F12683g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656538 - gi\|49656538\|emb\|CAG89219.1\| DEHA2F11638p [Debaryomyces hansenii]	173.0	[0..3]	[161..2]
gi\|58381684, gi\|... - gi\|58381684\|ref\|XP_311406.2\| ENSANGP00000025336 [Anopheles gambiae str. PEST], gi\|55242897\|gb\|EAA070...	173.0	[0..7]	[154..43]
gi\|46136973, gi\|... - gi\|46136973\|ref\|XP_390178.1\| VATL_NEUCR Vacuolar ATP synthase 16 kDa proteolipid subunit [Gibberella...	171.0	[0..1]	[161..1]
gi\|240133937 - gi\|240133937\|gb\|EER33492.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Candida tropicalis MYA... VATL_CANTR - V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1 gi\|241953253, gi... - gi\|241953253\|ref\|XP_002419348.1\| vacuolar ATP synthase proteolipid subunit, putative [Candida dublin... orf19.5886 - CUP5 CGDID:CAL0002461 Assembly 19, Contig19-10236 (56479, 57259) CDS, translated using codon table 1... gi\|238880844 - gi\|238880844\|gb\|EEQ44482.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Candida albicans WO-1]	170.0	[0..3]	[161..2]
gi\|49067667, gi\|... - gi\|71003978\|ref\|XP_756655.1\| vacuolar ATP synthase 16 kDa proteolipid subunit [Ustilago maydis 521],...	168.0	[0..1]	[158..6]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDLCPVYA PFFGVMGCTA AIVFASFGAA YGTAKAGVGI SAMGVLRPDL IVKNTIPVVM  60
   61 AGIIAIYGLV VSVLISGNLK QILSLYSGFI QLGAGLSVGL AGLAAGFAIG IVGDAGVRGT 120
  121 AQQPRLFVAM ILILIFAEVL GLYGLIVALL LNTRATDNVT C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2bl2A
Description:	The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits