YRC Public Data Repository - Protein Structure Prediction

Protein:	vma4
Organism:	Schizosaccharomyces pombe
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vma4.

Description	E-value	Query Range	Subject Range
gi\|45360895, gi\|... - gi\|45360895\|ref\|NP_989123.1\| ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E [Xenopus (Silura...	243.0	[0..1]	[227..1]
gi\|37221539 - gi\|37221539\|gb\|AAQ89897.1\| V-type H+ ATPase subunit E [Oreochromis mossambicus]	238.0	[0..1]	[227..1]
gi\|148222767, gi... - gi\|32450118\|gb\|AAH54191.1\| MGC64332 protein [Xenopus laevis], gi\|148222767\|ref\|NP_001079767.1\| hypot...	238.0	[0..1]	[227..1]
gi\|60652551, gi\|... - gi\|60652551\|gb\|AAX28970.1\| ATPase H+ transporting lysosomal 31kDa V1 subunit E isoform 1 [synthetic ...	237.0	[0..1]	[227..1]
ATP6V1E1 - ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 HGNC:857\|MIM:108... - H+ transporting, lysosomal 31kDa, V1 subunit E1 gi\|114684967 - gi\|114684967\|ref\|XP_514965.2\| PREDICTED: vacuolar H+ ATPase E1 isoform 4 [Pan troglodytes] VATE1_MACFA - V-type proton ATPase subunit E 1 OS=Macaca fascicularis GN=ATP6V1E1 PE=2 SV=1 gi\|190690781, gi... - gi\|60655655\|gb\|AAX32391.1\| ATPase lysosomal V1 subunit E isoform 1 [synthetic construct], gi\|6065565...	237.0	[0..1]	[227..1]
VATE1_RAT - V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1	235.0	[0..1]	[227..1]
gi\|57106611 - gi\|57106611\|ref\|XP_534937.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform 1 i...	233.0	[0..1]	[227..1]
VATE1_BOVIN - V-type proton ATPase subunit E 1 OS=Bos taurus GN=ATP6V1E1 PE=2 SV=1	233.0	[0..1]	[227..1]
gi\|25528534, gi\|... - gi\|6692094\|gb\|AAF24559.1\|AC007764_1 F22C12.4 [Arabidopsis thaliana], pir\|\|C96666 protein F22C12.4 [i...	233.0	[0..3]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSDEQVQA EMHKMVSFIK QEALEKAKEI HTLSEEEFQV EKAKIVREQC DAIDQTYDMK  60
   61 LKRASMAQKI AKSNVLNKSR LEILNSKQKV IDDIFSRVEK KLDGIEQKKD AYTKFMADLI 120
  121 VQAMELLGEP VGIVYSRQRD AEIVKAAIPK ATEVLKSKNG SIDYELDAET DDFLNDSVLG 180
  181 GVVLVGLGGK IRVDNTLRAR LEIVKEEALP EIRRLLFGEN PNRKFDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits