YRC Public Data Repository - Protein Structure Prediction

Protein:	uvi15
Organism:	Schizosaccharomyces pombe
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for uvi15.

Description	E-value	Query Range	Subject Range
gi\|41406546, gi\|... - gi\|41406546\|ref\|NP_959382.1\| hypothetical protein MAP0448 [Mycobacterium avium subsp. paratuberculos...	100.0	[0..4]	[67..692]
gi\|42549055, gi\|... - gi\|46128087\|ref\|XP_388597.1\| hypothetical protein FG08421.1 [Gibberella zeae PH-1], gi\|42549055\|gb\|E...	85.0	[0..5]	[67..469]
ANX11_MOUSE - Annexin A11 OS=Mus musculus GN=Anxa11 PE=1 SV=2	81.0	[0..10]	[66..120]
gi\|1362238, gi\|5... - gi\|510456\|emb\|CAA84070.1\| uvi15 [Schizosaccharomyces pombe], pir\|\|S54732 uvi15 protein - fission yea...	79.0	[0..1]	[77..1]
gi\|114622144 - gi\|114622144\|ref\|XP_001154339.1\| PREDICTED: similar to Glutamate receptor, ionotropic, N-methyl D-as...	77.0	[0..4]	[66..49]
GRINA - glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	76.0	[0..4]	[67..49]
gi\|109087974, gi... - gi\|109087976\|ref\|XP_001098441.1\| PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-as...	74.0	[0..4]	[67..49]
gi\|68369358 - gi\|68369358\|ref\|XP_707108.1\| PREDICTED: similar to annexin 11a isoform 3 [Danio rerio]	74.0	[0..1]	[66..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQQFYGDK GYAPAPPQQA YGGPNYYPPQ QNYPQQGYAP PQGYPQGGYP AQQPMYVQQP  60
   61 QASDPGGDLC CGLLTGLACC CCLDAMF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.407	a.36.1	Signal peptide-binding domain
View	Download	0.407	a.36.1	Signal peptide-binding domain
View	Download	0.292	a.24.28	Description not found.
View	Download	0.244	c.55.4	Translational machinery components
View	Download	0.236	a.130.1	Chorismate mutase II
View	Download	0.231	a.60.1	SAM/Pointed domain
View	Download	0.225	a.60.4	DNA repair protein Rad51, N-terminal domain
View	Download	0.211	a.3.1	Cytochrome c

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits