YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC18G6.06
Organism:	Schizosaccharomyces pombe
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC18G6.06.

Description	E-value	Query Range	Subject Range
gi\|157818659, gi... - gi\|27716127\|ref\|XP_233498.1\| PREDICTED: similar to UTP11-like, U3 small nucleolar ribonucleoprotein,...	236.0	[0..1]	[249..1]
UTP11_MOUSE - Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1	235.0	[0..1]	[249..1]
gi\|197101757 - gi\|197101757\|ref\|NP_001126408.1\| UTP11-like, U3 small nucleolar ribonucleoprotein [Pongo abelii] gi\|55731348 - gi\|55731348\|emb\|CAH92388.1\| hypothetical protein [Pongo abelii]	234.0	[0..1]	[249..1]
UTP11L - UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	233.0	[0..1]	[249..1]
gi\|55586846 - gi\|55586846\|ref\|XP_513332.1\| PREDICTED: UTP11-like, U3 small nucleolar ribonucleoprotein, [Pan trogl...	232.0	[0..1]	[249..1]
gi\|31209297, gi\|... - gi\|31209297\|ref\|XP_313615.1\| ENSANGP00000013368 [Anopheles gambiae str. PEST], gi\|30176757\|gb\|EAA091... AGAP004336-PA - UTP11-like, U3 small nucleolar ribonucleoprotein\|protein_coding\|2R:54821708:54822466:1\|gene:AGAP0043...	231.0	[0..3]	[249..2]
gi\|76614468 - gi\|76614468\|ref\|XP_617852.2\| PREDICTED: similar to UTP11-like, U3 small nucleolar ribonucleoprotein,...	226.0	[0..1]	[249..1]
gi\|44980856 - gi\|44980856\|gb\|AAS50739.1\| ABL032Cp [Ashbya gossypii ATCC 10895] gi\|45185198, gi\|... - gi\|45185198\|ref\|NP_982915.1\| ABL032Cp [Ashbya gossypii ATCC 10895], gi\|44980856\|gb\|AAS50739.1\| ABL03...	225.0	[0..3]	[249..2]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSFKNAGQ RKNHRERAQP FERRKWGLLE KRKDYAQRAQ DYKTKQKKLK RLREKALERN  60
   61 PDEFYHEMTH KKTKNGVPLE QREDSTIDMD TIKILKTQDI GWIRHHRNVE RAKIDHLEQQ 120
  121 MHTVGAHR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKNESRKHTI FVDNVKEAKS FNPAEFFQTT DDLVGRTENR VKKDQIENNE LTNQPFSGKL  60
   61 HSKLKEKAAT ELLLRQKRDK KLAAAEERVE LDRLLQGKGG RQKKKVVNGK PVYKWRNERK 120
  121 R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits