YRC Public Data Repository - Protein Structure Prediction

Protein:	ulp1
Organism:	Schizosaccharomyces pombe
Length:	568 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ulp1.

Description	E-value	Query Range	Subject Range
SENP2_MOUSE - Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2	342.0	[0..4]	[567..28]
gi\|114590909 - gi\|114590909\|ref\|XP_516925.2\| PREDICTED: similar to KIAA1331 protein [Pan troglodytes]	333.0	[0..4]	[567..276]
gi\|10314023 - gi\|10314023\|gb\|AAG15309.2\|AF151697_1 sentrin-specific protease [Homo sapiens]	331.0	[0..4]	[567..28]
gi\|74003536 - gi\|74003536\|ref\|XP_535831.2\| PREDICTED: similar to Sentrin-specific protease 2 (Sentrin/SUMO-specifi...	330.0	[0..4]	[567..28]
SENP2_PONAB - Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1 SENP2_PONPY - Sentrin-specific protease 2 - Pongo pygmaeus (Orangutan)	327.0	[0..4]	[567..28]
gi\|78708584 - gi\|78708584\|gb\|ABB47559.1\| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa (japo...	324.0	[0..184]	[563..1522]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGKRNASKR TRQDDCITYE EYQRKRKKTF LNTFVNICSR TVTYAKLFLT KTPISELDRI  60
   61 AGEAIPSNSN STNSKLEPST KAPESRFSHI NSKTERGYVT VESDMSSHNT LDRNSKPTVS 120
  121 HSYTNSSK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.260	0.219	SUMO-specific protease activity	a.1.1	Globin-like

Predicted Domain #2

Region A:
Residues: [129-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKFLDPIAL QNLFSPASDT HSQNIHDEAL SPSSFRVSRS RYFPRPHRSS KNLSVSNRLQ  60
   61 LAVFKETTSS TLSHGNSVEA DEINSFNPTP FSSSPLHFTN SSPNPNSDIV TPDKQLDVVS 120
  121 EHARYKHLPF TATLRKKSPH DSTSRKASFR FVQSDQQPAR NIVTSDIQNE KSLLLLIRDL 180
  181 KEKQTESFQD WNEVDFLQLK GLEISPPPTR PKFI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [343-568]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PELEFPDNAR KRALKYLNQS NSVSSSEPII TKFNIPITLK DLHTLRNRQW LNDEVINFYM  60
   61 NLISERSKID SSLPRVHGFN TFFYTSLQRR GYAGVRRWAK KARVNIADMD AVFIPVHLDV 120
  121 HWCMAVINKS KKRFEYWDSL AGSPGKVFDL LRDYYIAETK GAVDVSDWEN FMDDNSPRQR 180
  181 NGHDCGVFAC KTAECVSRNV PVQFSQNDMP ELRIKMAASI IDAQIY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.39794
Match:	2ckgA
Description:	No description for 2ckgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits