YRC Public Data Repository - Protein Structure Prediction

Protein:	ubp14
Organism:	Schizosaccharomyces pombe
Length:	775 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubp14.

Description	E-value	Query Range	Subject Range
gi\|42547076, gi\|... - gi\|46111517\|ref\|XP_382816.1\| hypothetical protein FG02640.1 [Gibberella zeae PH-1], gi\|42547076\|gb\|E...	501.0	[0..1]	[774..1]
gi\|85095236 - gi\|85095236\|ref\|XP_960037.1\| hypothetical protein NCU05777 [Neurospora crassa OR74A] gi\|28921496, gi\|... - gi\|32410303\|ref\|XP_325632.1\| hypothetical protein [Neurospora crassa], gi\|28921496\|gb\|EAA30801.1\| hy...	493.0	[0..1]	[774..1]
gi\|39946482, gi\|... - gi\|39946482\|ref\|XP_362778.1\| hypothetical protein MGG_08270 [Magnaporthe grisea 70-15], gb\|EAA57301....	487.0	[0..1]	[774..1]
gi\|4507855, gi\|1... - gi\|4507855\|ref\|NP_003472.1\| Ubiquitin isopeptidase T [Homo sapiens], gi\|1008542\|gb\|AAA78934.1\| ubiqu...	477.0	[0..9]	[774..14]
gi\|109474197 - gi\|109474197\|ref\|XP_001063371.1\| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 5 (Ubiq...	477.0	[0..9]	[774..14]
gi\|109095362 - gi\|109095362\|ref\|XP_001110679.1\| PREDICTED: ubiquitin specific peptidase 5 (isopeptidase T) isoform ...	477.0	[0..9]	[774..14]
gi\|73997322 - gi\|73997322\|ref\|XP_867393.1\| PREDICTED: similar to Ubiquitin isopeptidase T isoform 2 [Canis familia...	477.0	[0..9]	[774..14]
gi\|60652821, gi\|... - gi\|60652821\|gb\|AAX29105.1\| ubiquitin specific protease 5 [synthetic construct], gi\|30583883\|gb\|AAP36...	476.0	[0..9]	[774..14]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCPHLTETN VVIPDNSQVI YREECVRCFN SQDEEGGIDL CLTCFQSGCG ETGLKHSLVH  60
   61 FEQTLHPIVV TIARQPKQKI NDEPPQKITK LEIRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	2uzgA
Description:	No description for 2uzgA was found.

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	1.9065986135632	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [96-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSDEDLYDYF YVPKCLVCNI ILDIQDPLLS LSLEAMKNAT KASNKSQLTA WENELTTCDH  60
   61 IINLPENETY VTNLDNATCS KCDLAENLWM CLTCGALSCG RKQYGGGGGN GHALSHYDDT 120
  121 GHPLAVKLKS ISPDGQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	2g43A
Description:	No description for 2g43A was found.

Predicted Domain #3

Region A:
Residues: [233-628]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIYCYSCDEE RIDPNIKTHM LNFGIDIAKL NKTEKSLAEL QLEQNLNWDF GASEEDDASK  60
   61 RLFGPGLTGL KNLGNSCYLA STMQSLFSIK EFAIHELNLF NTYNSVCQTP TTDLQCQLGK 120
  121 LADGLVSGKF SKPSKIGLLN NPSSSILPYQ DGLRPFMFKD VVGQGHSEFG TSQQQDAYEF 180
  181 LLYLLGKIRK SSIAKTDITK IFDFETEQKL SCLSCKRVRY SSFSSQGLTL TVPRVKIGEI 240
  241 EGEQIYEEVS IDQCLDATIQ PDQMEYTCEA CKSKLGATTT TAMKSFPKVL ILQANRFDLQ 300
  301 GYQVKKLSIP IIVNEDGIYN FDRLMAKDHP NDEDYLPEKT ETIEWNQSAI EQLQAMGFPL 360
  361 VRCQRALLAT GNSDTETAMN WLFEHMEDPE IDKPIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	2f1zA
Description:	Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [629-775]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSELLPKADS SVSEENVQSL CEFGFTVAQA RKGLLESNNN IERAVDWILN HPDESFEEPP  60
   61 LEGSDSSIKN ENMGSWESTN VPVNYNLKAI ISHKGSSAHA GHYVAFIRKE IDGKQQWVLF 120
  121 NDEKVLQVAS LEEAKTTGYV YLFERLD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.16
Match:	1vjvA
Description:	Crystal structure of Ubiquitin carboxyl-terminal hydrolase 6 (yfr010w) from Saccharomyces cerevisiae at 1.74 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: