YRC Public Data Repository - Protein Structure Prediction

Protein:	ubp8
Organism:	Schizosaccharomyces pombe
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubp8.

Description	E-value	Query Range	Subject Range
gi\|113426698 - gi\|113426698\|ref\|XP_042698.4\| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 22 (Ubiqui...	299.0	[0..7]	[440..297]
gi\|76644257 - gi\|76644257\|ref\|XP_586712.2\| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 22 (Ubiquit...	277.0	[0..7]	[440..173]
gi\|109510503 - gi\|109510503\|ref\|XP_228777.4\| PREDICTED: similar to ubiquitin specific protease 27, X chromosome [Ra...	271.0	[0..7]	[447..210]
gi\|109132986, gi... - gi\|109132986\|ref\|XP_001100883.1\| PREDICTED: similar to ubiquitin specific protease 51 isoform 2 [Mac...	263.0	[0..6]	[438..193]
gi\|114688819, gi... - gi\|114688819\|ref\|XP_001147773.1\| PREDICTED: ubiquitin specific protease 51 isoform 1 [Pan troglodyte...	262.0	[0..6]	[438..193]
UBP22_MOUSE - Ubiquitin carboxyl-terminal hydrolase 22 OS=Mus musculus GN=Usp22 PE=2 SV=2	262.0	[0..7]	[440..22]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGDVEGCQH LKLKPADVEN YQKICTQIFS CHFVPRRCST CKRINKRSIR CLSCHSVGCL  60
   61 WGHHGEEHAM EHTHMIGVDV KNGHTYCFGC QDYVYQTELE TLRFKIKNIK AWQSDHKRLP 120
  121 EK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	2g43A
Description:	No description for 2g43A was found.

Predicted Domain #2

Region A:
Residues: [123-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNQMVCLEAY RKYPPVCATA GLRGIQNLGA TCFMSVILQS ILHNPLVRNL FFSGFHTSTD  60
   61 CKRPTCMTCA IDDMFSSIYN SKNKSTFYGP TAVLNLMWKL SKSLCGYSQQ DGHEFFVYLL 120
  121 DQMHTESGGG TSMPCTCPIH RIFSGSLKNV VTCLDCKKER VAVDPLMDIS LDINEPTLQG 180
  181 CLERFVSKEK VQYSCHSCGS KNAIKQLVFD KLPPTICMQL KRFEQNNFAM STKIDKQVSY 240
  241 PAFLRMRYNF NQDDVDYQLY SVVCHKGTLD TGHYIAYTYY QNQWFLLDDT TIVEVKESEV 300
  301 LNSQAYLLFY HERQILYSDE MTVKTEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.154902
Match:	2ibiA
Description:	No description for 2ibiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits