YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1289.08
Organism:	Schizosaccharomyces pombe
Length:	475 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1289.08.

Description	E-value	Query Range	Subject Range
gi\|39951355, gi\|... - gi\|39951355\|ref\|XP_363394.1\| hypothetical protein MGG_01320 [Magnaporthe grisea 70-15], gb\|EAA55669....	559.0	[0..2]	[474..19]
gi\|85111786 - gi\|85111786\|ref\|XP_964103.1\| UDP-N-acetylglucosamine pyrophosphorylase [Neurospora crassa OR74A] gi\|28925869, gi\|... - gi\|32417642\|ref\|XP_329299.1\| hypothetical protein [Neurospora crassa], gi\|28925869\|gb\|EAA34867.1\| UD...	544.0	[0..9]	[469..16]
gi\|26338836 - gi\|26338836\|dbj\|BAC33089.1\| unnamed protein product [Mus musculus]	540.0	[0..9]	[474..7]
gi\|67904214, gi\|... - gi\|67904214\|ref\|XP_682363.1\| hypothetical protein AN9094.2 [Aspergillus nidulans FGSC A4], ref\|XP_41... gi\|57236785 - gi\|57236785\|gb\|AAW49004.1\| UDP-N-acetylglucosamine pyrophosphorylase [Emericella nidulans]	537.0	[0..4]	[474..26]
gi\|109498936, gi... - gi\|62659702\|ref\|XP_573497.1\| PREDICTED: similar to UDP-N-acetylhexosamine pyrophosphorylase [Rattus ...	530.0	[0..9]	[474..7]

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Predicted Domain #1

Region A:
Residues: [1-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDKELFDRS IFEETNQLHL YDQLNYLKKN DLQKFRKLLN QVQQLDLRSL WLKYRNAKAT  60
   61 SQENRKLSPS EVGPLSIVDT SDSSWWRTGL REIARGHVAA LVLAGGQGTR LGFAGPKGCF 120
  121 RLGLPNNPSI FELQAQKIKK SLALARAAFP DQEASISIPW YIMVSECTSE ETISFFKEND 180
  181 FFGIDKKDVF FFQQGVLPCL DISGRVLFES DSSLAWAPNG NGGIYEALLS SGALNDMNRR 240
  241 GILHITAYSV DNVLVLPVDP VFIGMATTKK LEVATKTVEK IDPAEKVGLL VSSHNHPCVV 300
  301 EYSEISDEAC KATENVDGHK HLLLRAANIA YHYFSFDFLQ KASLHSSTLP IHLACKKIPF 360
  361 YDVTSHHYTT PLNPNGYKLE SFIFDLFPSV SVENFGCFQV PRRTSFSPLK NSSKSPNDNH 420
  421 ETCVNDILSL GKSWILKNGG ILSPSDCTYV SPECSLQGES LEWIKGKQVS NCKLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	132.0
Match:	2yqcA
Description:	No description for 2yqcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits