YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC23H4.04
Organism:	Schizosaccharomyces pombe
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC23H4.04.

Description	E-value	Query Range	Subject Range
gi\|238720208, gi... - gi\|77963649\|ref\|ZP_00827457.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	390.0	[0..29]	[413..4]
gi\|238789081, gi... - gi\|77972866\|ref\|ZP_00828422.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	390.0	[0..29]	[410..4]
gi\|238791830, gi... - gi\|77980028\|ref\|ZP_00835443.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	389.0	[0..29]	[413..4]
gi\|77959452 - gi\|77959452\|ref\|ZP_00823472.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	388.0	[0..29]	[413..23]
gi\|89105578 - gi\|89105578\|ref\|ZP_01178095.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	388.0	[0..29]	[410..34]
gi\|77635911 - gi\|77635911\|ref\|ZP_00797990.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	387.0	[0..29]	[410..24]
gi\|77629499, gi\|... - gi\|77629499\|ref\|ZP_00792085.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	387.0	[0..29]	[410..24]
gi\|75209213, gi\|... - gi\|75209213\|ref\|ZP_00709460.1\| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltr...	385.0	[0..27]	[410..1]
gi\|45436440, gi\|... - gi\|45441579\|ref\|NP_993118.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia ... gi\|22125693, gi\|... - gi\|22125693\|ref\|NP_669116.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia ... gi\|115347385, gi... - gi\|218928774\|ref\|YP_002346649.1\| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis CO92], gi\|16121... gi\|149366398, gi... - gi\|149366398\|ref\|ZP_01888432.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|167470788 - gi\|167470788\|ref\|ZP_02335492.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPS - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=mnm... MNMA_YERPP - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis (strain Pestoides F) GN=mnmA PE=3 SV=1 gi\|166211105, gi... - gi\|166211105\|ref\|ZP_02237140.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|229694088, gi... - gi\|229841625\|ref\|ZP_04461783.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|167048808, gi... - gi\|167401703\|ref\|ZP_02307194.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|229843742, gi... - gi\|229843742\|ref\|ZP_04463885.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|167421866, gi... - gi\|167421866\|ref\|ZP_02313619.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|167054667, gi... - gi\|167426312\|ref\|ZP_02318065.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPA - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mnmA PE=3 SV=1 MNMA_YERPN - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mnmA PE=3 SV=... gi\|165925423, gi... - gi\|165925423\|ref\|ZP_02221255.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPE - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis GN=mnmA PE=3 SV=1 gi\|165938528, gi... - gi\|165938528\|ref\|ZP_02227085.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... gi\|229703505, gi... - gi\|229894486\|ref\|ZP_04509668.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPY - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mnm... gi\|166008070, gi... - gi\|166008070\|ref\|ZP_02228968.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersin... MNMA_YERPG - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mnmA PE=3 SV=1 MNMA_YERPB - tRNA-specific 2-thiouridylase MnmA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mnmA... TRMU_YERPS, MNMA... - tRNA - Yersinia pseudotuberculosis, tRNA-specific 2-thiouridylase mnmA OS=Yersinia pseudotuberculosi...	385.0	[0..29]	[410..4]
TRMU_ERWCT, MNMA... - tRNA - Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum), tRNA-specific 2-thiourid... MNMA_PECAS - tRNA-specific 2-thiouridylase MnmA OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) ...	383.0	[0..29]	[411..4]

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Predicted Domain #1

Region A:
Residues: [1-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSLFLQKQ IIECSKAFQP HSTRLQWPKS QDKVFVAMSG GVDSSFSAYL LKSQGYNVEG  60
   61 VFMRNWLDED SAPSGCPAER DWATVQKVCK KLNISCRRFN FEKEYWNLVF EPSLDLYENG 120
  121 LTPNPDVSCN RQVKFGALFD ALKKHCENNV KGDWWLASGH YAKSVVNIET NESHMCIPTD 180
  181 KRKDQTLFLC TIRKEALEKT IFPLHNWTKE NVKKQASSAG FKEIAEKQES QGLCFVSPNV 240
  241 GRKFRKFLQR YLNFSDRPIK VIAGKNVVGE FSGNHGIWSL TVGERCGLSL PQAQSEYFGR 300
  301 WYVWKKDIKN NALYICRGTN NELLMSKCIY LKDWKWCGTK LQNLEKSALS CFVRVRHQQP 360
  361 LQPAKVTWRN PESVKIHFQD KQRAVTPGQV IAVYVNDVCL GGGMVDTVEP EKDFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	2derA
Description:	No description for 2derA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits