YRC Public Data Repository - Protein Structure Prediction

Protein:	trk1
Organism:	Schizosaccharomyces pombe
Length:	841 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for trk1.

Description	E-value	Query Range	Subject Range
gi\|1076908, gi\|5... - gi\|550526\|gb\|AAC41667.1\| K+ transporter homologue [Schizosaccharomyces pombe], pir\|\|S50225 potassium...	618.0	[0..28]	[841..20]
gi\|49643776, gi\|... - gi\|50309269\|ref\|XP_454641.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643776\|emb\|CAG9972... gi\|49643776 - gi\|49643776\|emb\|CAG99728.1\| KLLA0E15335p [Kluyveromyces lactis]	498.0	[0..2]	[839..33]
gi\|4809179 - gi\|4809179\|gb\|AAD30128.1\|AF136181_1 potassium transporter [Kluyveromyces lactis]	498.0	[0..2]	[839..33]
gi\|49116788, gi\|... - gi\|67902084\|ref\|XP_681298.1\| hypothetical protein AN8029.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	484.0	[0..2]	[840..12]
TRK2_YEAST - Low-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... TRK2 - Component of the Trk1p-Trk2p potassium transport system	484.0	[0..3]	[815..39]
gi\|42554669, gi\|... - gi\|46125803\|ref\|XP_387455.1\| hypothetical protein FG07279.1 [Gibberella zeae PH-1], gi\|42554669\|gb\|E...	473.0	[0..15]	[838..25]
gi\|18699011 - gi\|18699011\|gb\|AAL77222.1\| potassium transporter [Podospora anserina]	465.0	[0..7]	[840..45]
gi\|7799615 - gi\|7799615\|emb\|CAB91046.1\| high-affinity potassium uptake transporter [Debaryomyces occidentalis]	458.0	[0..1]	[841..39]
gi\|115437446, gi... - gi\|115437446\|ref\|XP_001217812.1\| hypothetical protein ATEG_09190 [Aspergillus terreus NIH2624], gi\|1...	451.0	[0..2]	[834..19]
gi\|70985214, gi\|... - gi\|70985214\|ref\|XP_748113.1\| potassium ion transporter (Trk1) [Aspergillus fumigatus Af293], gi\|6684...	451.0	[0..16]	[835..23]

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Predicted Domain #1

Region A:
Residues: [1-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNYIQRWF KWVIPTFGFL AIHYIYIISL TIIASILLFT GGTTTKIKYI DALFLASSAT  60
   61 TQTGLNSVDL NSLSIWQQFI LYGFTAITVP IWMHGSISFI RLYWFRRKFK DVVRQNRTRK 120
  121 FQRKLRKSLM KKSEDDEEQG VRGRKIRVML PYLHSLRSPT SLKNFSRFDT HDSTNNPYFP 180
  181 DNPPSPKADI SKDEYFGKYL PKKSDTLDMD LESHNMTFHD YEPSIENKNY DFGSSHSASM 240
  241 QMYEMDDLHP RLRRQSSFIS SVNPLEADDT RETLSEGALV QESLPMAYSY SDTNLVVSRD 300
  301 SFTLTGDDNL FPEGGLRPAN TIDGIVRSSL SSSSLSKDTE PSTVDMHIAF TGLNKPTIER 360
  361 ERNLKLRKKS RFYKKSLRSR FSRGLHRPIR WTKSFTSNRR NLTLERVLSS AFAKKREPSI 420
  421 SSRHTTMSLP YLSYNPTVDR N

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.0
Match:	2i1jA
Description:	No description for 2i1jA was found.

Predicted Domain #2

Region A:
Residues: [442-841]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAFVALSKEQ RDELGGIEYR ALKCVCSMVT LYFIIFNIAA FVTFIVFAYT AVGSREVIDS  60
   61 YDLRRGWWAL FSSASSFNDL GFSLIPSSFV PMNRNIFLLL ISSLFIIAGN TGFPCFFRTF 120
  121 IWTTYKLYPF SFEKKEAMAF LLDHPRRCFT LLFPSGATWV LFFVLLLLNV IDLVLFMVLD 180
  181 TGSKAVASLP KGIRVVNAIF QSVCTRTAGF TSVSISELHP AVLVSYMVMM YISVYPVAIN 240
  241 MRNTNVYEER SLGVYRTEDD EGKSFLKDHL TEQLSYDLWY IFLGLFIICI CEGGKISNPL 300
  301 DTDFSIFTVL FEVVSAYGTV GLSTGLSSSN CSLSARFTTI SKLVIIALEL RGRHRGLPRA 360
  361 VDRAILLPSE KNNLKEEEDY QRRHGFSIDN ARGSIAVSRD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits