YRC Public Data Repository - Protein Structure Prediction

Protein:	cdc8
Organism:	Schizosaccharomyces pombe
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc8.

Description	E-value	Query Range	Subject Range
gi\|94496140, gi\|... - gi\|94496140\|ref\|ZP_01302718.1\| AAA ATPase, central region [Sphingomonas sp. SKA58], gi\|94424319\|gb\|E...	109.0	[0..1]	[155..394]
gi\|110822010, gi... - gi\|111022480\|ref\|YP_705452.1\| ATP-binding subunit of heat shock protein ClpB [Rhodococcus jostii RHA...	109.0	[0..1]	[151..392]
gi\|113901937, gi... - gi\|113946409\|ref\|ZP_01432098.1\| ATPase AAA-2 [Salinispora tropica CNB-440], gi\|113901937\|gb\|EAU20785...	108.0	[0..1]	[151..440]
CLPB_CORGL - Chaperone protein ClpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1 CLPB_CORGL - Chaperone protein ClpB OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG...	107.0	[0..1]	[152..393]
gi\|25289928 - pir\|\|AF3276 ATP-dependent clp proteinase, ATP-binding chain clpb BMEI0195 [imported] - Brucella meli... gi\|17986479, gi\|... - gi\|17986479\|ref\|NP_539113.1\| ATP-dependent Clp protease, ATP-binding subunit CLPB [Brucella melitens...	107.0	[0..1]	[152..449]
gi\|54018884, gi\|... - gi\|54027376\|ref\|YP_121618.1\| putative Clp protease ATP-binding subunit [Nocardia farcinica IFM 10152...	106.0	[0..1]	[151..392]
gi\|120401674, gi... - gi\|90205850\|ref\|ZP_01208488.1\| AAA ATPase, central region:Clp, N terminal [Mycobacterium vanbaalenii...	106.0	[0..1]	[151..392]
gi\|17232576, gi\|... - gi\|17232576\|ref\|NP_489124.1\| endopeptidase Clp ATP-binding chain B [Nostoc sp. PCC 7120], gi\|1713422... gi\|25289937 - pir\|\|AD2441 endopeptidase Clp ATP-binding chain B [imported] - Nostoc sp. (strain PCC 7120)	105.0	[0..1]	[155..356]
gi\|56552320, gi\|... - gi\|56552320\|ref\|YP_163159.1\| ATP-dependent Clp protease [Zymomonas mobilis subsp. mobilis ZM4], gi\|5... gi\|241373931, gi... - gi\|241761623\|ref\|ZP_04759710.1\| ATP-dependent chaperone ClpB [Zymomonas mobilis subsp. mobilis ATCC ...	105.0	[0..1]	[155..394]
gi\|110833340, gi... - gi\|110833340\|ref\|YP_692199.1\| ATP-dependent Clp protease, ATP-binding subunit ClpB [Alcanivorax bork...	105.0	[0..1]	[155..391]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLREKINA ARAETDEAVA RAEAAEAKLK EVELQLSLKE QEYESLSRKS EAAESQLEEL  60
   61 EEETKQLRLK ADNEDIQKTE AEQLSRKVEL LEEELETNDK LLRETTEKMR QTDVKAEHFE 120
  121 RRVQSLERER DDMEQKLEEM TDKYTKVKAE LDEVHQALED L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits