YRC Public Data Repository - Protein Structure Prediction

Protein:	tip1
Organism:	Schizosaccharomyces pombe
Length:	461 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tip1.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	171.0	[0..1]	[460..2147]
MYH4_RAT - Myosin-4 OS=Rattus norvegicus GN=Myh4 PE=1 SV=1	164.0	[0..1]	[460..1147]
MYH4_MOUSE - Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1	164.0	[0..1]	[460..1147]
MYH4_CANLF - Myosin-4 OS=Canis lupus familiaris GN=MYH4 PE=3 SV=1	164.0	[0..1]	[460..1147]
gi\|45383668, gi\|... - gi\|9800486\|gb\|AAF99314.1\|AF272033_1 fast myosin heavy chain isoform 2 [Gallus gallus], gi\|45383668\|r...	163.0	[0..1]	[460..1151]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1	162.0	[0..1]	[460..1145]
gi\|76643989 - gi\|76643989\|ref\|XP_615306.2\| PREDICTED: similar to myosin, heavy polypeptide 4, skeletal muscle [Bos...	162.0	[0..1]	[460..613]

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Predicted Domain #1

Region A:
Residues: [1-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLGSVVEV ITGERGFVRY AGEVENRKGV YVGLELLPEF AEFGKNRGVV DGREYFKTKN  60
   61 NEKTGIFVPF DKCKLASSIS SSPSPKIDGT AASIGMGFPP MSPNLQSSIP RLTNVSSSSN 120
  121 LSMNTISSTA LTPTEKILQK RIEDLLYERQ NHQQQLEEVL ATVDQLQSLV TNFNDQQDEV 180
  181 DELRERITLK EERIQQMRNE ASQRRFEFKT TIECLEESSN RAIETYENRI AELEAQLEMY 240
  241 MSGKSEDDLL FSLQQERDYA LNQVEILQER VDTLMKQKAN SSTANEKLSH MESSSPTLTN 300
  301 ASFESPKRGK GSNDLPENHP QRRQTLEFYE IEIEVLREKV EKLQALSDEK DFYISKLEKS 360
  361 LDRNDTTPVP SDEKLSNYAA EKENLVSRIS ELEHTIEQLT INNERDNERM SPAEFELETT 420
  421 QEVEENDSDS HDDEETWCEV CETNNHSLQE CPTVFGSTDE A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits