YRC Public Data Repository - Protein Structure Prediction

Protein:	nmt1
Organism:	Schizosaccharomyces pombe
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nmt1.

Description	E-value	Query Range	Subject Range
gi\|157069916, gi... - gi\|164423028\|ref\|XP_001728013.1\| nmt1 protein, variant 2 [Neurospora crassa OR74A], gi\|164423026\|ref... gi\|15822513 - gi\|15822513\|gb\|AAG23338.1\| thiamine biosynthesis protein NMT-1 [Neurospora crassa]	244.0	[0..1]	[331..1]
gi\|85091484 - gi\|85091484\|ref\|XP_958924.1\| NMT1 PROTEIN HOMOLOG [Neurospora crassa OR74A] gi\|32423199, gi\|... - gi\|32423199\|ref\|XP_332037.1\| NMT1 PROTEIN HOMOLOG [Neurospora crassa], gi\|28920316\|gb\|EAA29688.1\| NM...	237.0	[0..12]	[331..10]
gi\|169776175 - gi\|169776175\|ref\|XP_001822554.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238502865, gi... - gi\|238502865\|ref\|XP_002382666.1\| thiamine biosynthesis protein (Nmt1), putative [Aspergillus flavus ... gi\|83771289 - gi\|83771289\|dbj\|BAE61421.1\| unnamed protein product [Aspergillus oryzae]	233.0	[0..1]	[331..1]
NMT1_ASPPA - 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase OS=Aspergillus parasiticus GN=nmt1 PE=...	231.0	[0..1]	[331..1]
gi\|90298887, gi\|... - gi\|90298887\|gb\|EAS28518.1\| hypothetical protein CIMG_09722 [Coccidioides immitis RS], gi\|119175900\|r...	230.0	[0..1]	[342..1]
gi\|49652108, gi\|... - gi\|50405615\|ref\|XP_456444.1\| hypothetical protein DEHA0A02827g [Debaryomyces hansenii CBS767], gi\|49... gi\|49652108 - gi\|49652108\|emb\|CAG84396.1\| DEHA2A02420p [Debaryomyces hansenii]	229.0	[0..1]	[331..1]
gi\|49116485, gi\|... - gi\|67902044\|ref\|XP_681278.1\| NMT1_ASPPA NMT1 protein homolog [Aspergillus nidulans FGSC A4], ref\|XP_...	229.0	[0..1]	[331..1]
gi\|116203795, gi... - gi\|88175909\|gb\|EAQ83377.1\| hypothetical protein CHGG_09781 [Chaetomium globosum CBS 148.51], gi\|1162...	229.0	[0..1]	[331..1]
gi\|42544340, gi\|... - gi\|46109580\|ref\|XP_381848.1\| NMT1_ASPPA NMT1 protein homolog [Gibberella zeae PH-1], gi\|42544340\|gb\|...	229.0	[0..1]	[331..1]
gi\|66845723, gi\|... - gi\|70985178\|ref\|XP_748095.1\| thiamine biosynthesis protein (Nmt1) [Aspergillus fumigatus Af293], gi\|... gi\|55743873 - gi\|55743873\|gb\|AAV64845.1\| thiamine biosynthesis protein [Aspergillus fumigatus] gi\|159125982 - gi\|159125982\|gb\|EDP51098.1\| thiamine biosynthesis protein (Nmt1), putative [Aspergillus fumigatus A1...	228.0	[0..1]	[331..1]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNKITFLT NWEATPYHLP IFLAQTRGYY EREGIEVAIL EPTNPSDVTA LIGSGKVDMG  60
   61 LKAMIHTLAA KARGYPVTSF GSLLNEPFTG LITLKGNGIN DFKDIKGKRI GYVGEFGKIQ 120
  121 LDDLCSKFGL SPSDYTAIRC GMNIAPAIIN GEIDGGIGIE CMQQVELERW CVSQGRPRSD 180
  181 VQMLRIDRLA NLGCCCFCTI LYIAHDEFIA KHPDKIKAFL RAIHSATLDM LKDPVQTYKE 240
  241 YIHFKREMGS ELHREQFERC FAYFSHDISN VPRDWNKVTN YSKRLGIIPQ DFEPNCTNGY 300
  301 LTWELDPDEK DPMGKQEAIA EIQDEIKQKG GVFSGNSLRY VEPANL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.09691
Match:	2g29A
Description:	No description for 2g29A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits