YRC Public Data Repository - Protein Structure Prediction

Protein:	thi2
Organism:	Schizosaccharomyces pombe
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for thi2.

Description	E-value	Query Range	Subject Range
THI4_FUSOX - Thiamine thiazole synthase OS=Fusarium oxysporum GN=sti35 PE=1 SV=2 gi\|280494 - pir\|\|B37767 stress-inducible protein sti35 - fungus (Fusarium oxysporum) THI4_FUSO4 - Thiamine thiazole synthase OS=Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC...	254.0	[0..1]	[325..1]
gi\|6552395 - gi\|6552395\|dbj\|BAA88227.1\| thiamin biosynthetic enzyme [Glycine max]	252.0	[0..2]	[324..13]
gi\|46111175, gi\|... - gi\|46111175\|ref\|XP_382645.1\| THI4_FUSOX Thiazole biosynthetic enzyme, mitochondrial precursor (Stres...	248.0	[0..1]	[325..1]
THI4_ASPOR - Thiamine thiazole synthase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=thiA PE=3 SV=2 THI4_ASPOR - Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2	243.0	[0..1]	[326..1]
THI4_YARLI - Thiamine thiazole synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=THI4 PE=3 SV=1 gi\|49645783 - gi\|49645783\|emb\|CAG83845.1\| YALI0A09768p [Yarrowia lipolytica]	242.0	[0..46]	[324..37]
gi\|125600511, gi... - gi\|50937969\|ref\|XP_478512.1\| putative thiamine biosynthesis protein [Oryza sativa (japonica cultivar...	241.0	[0..1]	[327..1]
gi\|39971263, gi\|... - gi\|39971263\|ref\|XP_367022.1\| hypothetical protein MGG_03098 [Magnaporthe grisea 70-15], gb\|EAA47855....	240.0	[0..1]	[325..1]
gi\|168162 - gi\|168162\|gb\|AAA33340.1\| STI35 protein gi\|134940 - sp\|P23617\|THI4_FUSSH Thiazole biosynthetic enzyme, mitochondrial precursor (Stress-inducible protein... THI4_FUSSH - Thiamine thiazole synthase OS=Fusarium solani subsp. phaseoli GN=sti35 PE=2 SV=1	240.0	[0..1]	[324..1]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPATAVVTP QTAFKTDLPV EKTAHNTVVK SEMGALSKAY PTYSLDESFS FAPIRESTVS  60
   61 RAMTRRYFSD LDKYAESDIV IVGAGSAGLT AAYYIGTRRP DLKIAIIEAS VAPGGGAWLG 120
  121 GQLFSAMVVR KPADLFLNEI GVPYEDEGDY VVVKHAALFT STVMARTLAL PNVKLFNATA 180
  181 VEDLIVKEGK DGKQRIAGVV TNWTLVSLNH GLQSCMDPNT INAHLVVSAT GHDGPFGAFC 240
  241 VKRLASAQLV SNLHDMRPLD MNRAEDLIVK GTREVFPGMI VGGMELSEFD GANRMGPTFG 300
  301 GMMFSGIKAA QEALAIFDER KAVNEKYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	1rp0A
Description:	Crystal Structure of Thi1 protein from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits