YRC Public Data Repository - Protein Structure Prediction

Protein:	tfs1
Organism:	Schizosaccharomyces pombe
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tfs1.

Description	E-value	Query Range	Subject Range
gi\|73999378 - gi\|73999378\|ref\|XP_535071.2\| PREDICTED: similar to transcription elongation factor A (SII) 1 [Canis ...	298.0	[0..3]	[292..143]
gi\|119595576 - gi\|119595576\|gb\|EAW75170.1\| transcription elongation factor A (SII), 2, isoform CRA_c [Homo sapiens] gi\|114683105 - gi\|114683105\|ref\|XP_001152294.1\| PREDICTED: transcription elongation factor A protein 2 isoform 1 [P...	293.0	[0..3]	[291..5]
gi\|109091280 - gi\|109091280\|ref\|XP_001082344.1\| PREDICTED: transcription elongation factor A protein 2 isoform 1 [M...	289.0	[0..3]	[291..5]
gi\|167773997 - gi\|167773997\|gb\|ABZ92433.1\| transcription elongation factor A (SII), 2 [synthetic construct] gi\|114683101, gi... - gi\|114683103\|ref\|XP_001153063.1\| PREDICTED: transcription elongation factor A protein 2 isoform 10 [... TCEA2 - transcription elongation factor A (SII), 2	288.0	[0..3]	[292..5]
gi\|29437299 - gi\|29437299\|gb\|AAH49617.1\| Tcea2 protein [Mus musculus]	284.0	[0..3]	[292..34]
TCEA2_RAT - Transcription elongation factor A protein 2 OS=Rattus norvegicus GN=Tcea2 PE=2 SV=1 gi\|712842 - gi\|712842\|dbj\|BAA02310.1\| transcription elongation factor S-II [Rattus sp.]	280.0	[0..3]	[292..4]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSADIRSAK AALEKAIQGK NIETIINIMT RLKNEVVATE ELLKETRLGL VVGKLRSHPN  60
   61 EKVGEQAREI VKKWKADVSK GRPLKTTTTT SSTPSKHADV GSQAQKQVQK QSSSGQRTFK 120
  121 SDNVNVNVTD DKIRNNCIGL MYNALVIDSD ESSSLIIAKA KEIDAQVLAR AAGKTGSEYR 180
  181 NRMRSLYMNL KDKNNPKLRA SVLRNEITPQ RLSTMTSAEL ASEDRRKEDA KLEQENLFHA 240
  241 QGAKPQKAVT DLFTCGKCKQ KKVSYYQMQT RSADEPMTTF CECTVCGNRW KFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	1pqvS
Description:	RNA polymerase II-TFIIS complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits