YRC Public Data Repository - Protein Structure Prediction

Protein:	tug1
Organism:	Schizosaccharomyces pombe
Length:	446 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tug1.

Description	E-value	Query Range	Subject Range
gi\|72057634, gi\|... - gi\|72057634\|ref\|XP_802011.1\| PREDICTED: similar to tubulin, alpha 2 isoform 5 [Strongylocentrotus pu...	634.0	[0..3]	[442..15]
gi\|67463741, gi\|... - gi\|67463743\|pdb\|1Z2B\|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex, gi\|674...	633.0	[0..3]	[443..2]
gi\|73996778 - gi\|73996778\|ref\|XP_851095.1\| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis fa...	631.0	[0..3]	[442..69]
gi\|32400724 - gi\|32400724\|gb\|AAP80594.1\|AF465692_1 putative alpha-tubulin [Oikopleura dioica]	631.0	[0..3]	[442..2]
gi\|27762594 - gi\|27762594\|gb\|AAO20084.1\| alpha tubulin [Cricetulus griseus]	631.0	[0..3]	[442..1]
gi\|47229230 - gi\|47229230\|emb\|CAG03982.1\| unnamed protein product [Tetraodon nigroviridis]	631.0	[0..3]	[442..553]
gi\|149632555 - gi\|149632555\|ref\|XP_001509265.1\| PREDICTED: similar to alpha-tubulin I [Ornithorhynchus anatinus] TBA1B_MOUSE - Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2 gi\|166796019, gi... - gi\|166796019\|ref\|NP_001107705.1\| tubulin, alpha 4a [Xenopus (Silurana) tropicalis], gi\|165970544\|gb\|... TUBA1B - tubulin, alpha 1b TBA1B_MACFA - Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1 TBA1B_PIG - Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=1 SV=1 TBA1B_BOVIN - Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2 gi\|123981190, gi... - gi\|208967997\|dbj\|BAG73837.1\| tubulin, alpha 1b [synthetic construct], gi\|123996027\|gb\|ABM85615.1\| al... gi\|126343940 - gi\|126343940\|ref\|XP_001363356.1\| PREDICTED: similar to alpha-tubulin I [Monodelphis domestica] ENSPTRT00000010451 - null gi\|109096472, gi... - gi\|109096480\|ref\|XP_001108691.1\| PREDICTED: tubulin, alpha, ubiquitous isoform 29 [Macaca mulatta], ... TBA1B_CRIGR - Tubulin alpha-1B chain OS=Cricetulus griseus GN=TUBA1B PE=2 SV=1 TBA1B_MERUN - Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1 TBA1B_RAT - Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1 ENSCJAT00000041053 - null gi\|55250468 - gb\|AAH85982.1\| Unknown (protein for MGC:97981) [Xenopus laevis]	631.0	[0..3]	[442..2]

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Predicted Domain #1

Region A:
Residues: [1-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGREIITLQA GQCGNQIGSQ FWQQLCLEHG IGPDGTLESF ATEGVDRKDV FFYQSDDTRY  60
   61 IPRAILIDLE PRVVNNILSD TYGSLYNPEN ILITKNGGGA GNNWANGYSH AERIFEDIMD 120
  121 MIDREADGSD SLEGFSLLHS IAGGTGSGLG SFLLERLNDR YPKKIIQTYS VFPNSQSVSD 180
  181 VVVQPYNSLL ALKRLTLNAD SVVVLDNAAL AHIAADRLHT QNPTFHQQNQ LVSTVMSAST 240
  241 TTLRYPGYMN NDLVSIIASL IPSPRCHFLL TSYTPFTNQQ VEEAKAIRKT TVLDVMRRLL 300
  301 LPKNQMVSVN PSKKSCFISI LDIIQGEADP ADVHKSLLRI RERRYASFIP WGPASIQVAL 360
  361 SKKSPYIKTN HRVSGLMLAN HTSIASLFKR TLDQYDRLRK RNAFLEQYKK EAIFEDDLNE 420
  421 FDSSRDVVAD LINEYEACED PNYLSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	158.0
Match:	1z5vA
Description:	Crystal structure of human gamma-tubulin bound to GTPgammaS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits