YRC Public Data Repository - Protein Structure Prediction

Protein:	nda3
Organism:	Schizosaccharomyces pombe
Length:	448 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nda3.

Description	E-value	Query Range	Subject Range
gi\|48095525 - gi\|48095525\|ref\|XP_392313.1\| PREDICTED: similar to -Tubulin at 56D CG9277-PB, isoform B [Apis mellif...	661.0	[0..1]	[447..1]
gi\|91086093 - gi\|91086093\|ref\|XP_967267.1\| PREDICTED: similar to beta1-tubulin [Tribolium castaneum]	661.0	[0..1]	[447..1]
gi\|157132376, gi... - gi\|157132376\|ref\|XP_001656025.1\| tubulin beta chain [Aedes aegypti], gi\|108881720\|gb\|EAT45945.1\| tub...	659.0	[0..1]	[447..1]
gi\|157767470 - gi\|157767470\|ref\|XP_001667215.1\| Hypothetical protein CBG16137 [Caenorhabditis briggsae AF16] tbb-4 - tubulin beta chain status:Partially_confirmed UniProt:P41937 protein_id:CAA86310.1 gi\|39596183, gi\|... - gi\|39596183\|emb\|CAE69820.1\| Hypothetical protein CBG16137 [Caenorhabditis briggsae], gi\|187026681\|em...	658.0	[0..1]	[444..1]
gi\|74223737 - gi\|74223737\|dbj\|BAE28709.1\| unnamed protein product [Mus musculus]	657.0	[0..1]	[429..1]
gi\|60653689 - gi\|60653689\|gb\|AAX29538.1\| tubulin alpha 6 [synthetic construct]	657.0	[0..1]	[438..1]
gi\|73996516 - gi\|73996516\|ref\|XP_850665.1\| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) isoform 2...	657.0	[0..1]	[438..1]
gi\|114644941 - gi\|114644941\|ref\|XP_001158840.1\| PREDICTED: tubulin alpha 6 isoform 1 [Pan troglodytes] gi\|123990474, gi... - gi\|123999316\|gb\|ABM87234.1\| tubulin, alpha 6 [synthetic construct], gi\|123990474\|gb\|ABM83912.1\| tubu... TUBA1C - tubulin, alpha 1c	657.0	[0..1]	[438..1]

Back

Predicted Domain #1

Region A:
Residues: [1-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIVHIQAG QCGNQVGAAF WSTIADEHGL DSAGIYHGTS EAQHERLNVY FNEAAGGKYV  60
   61 PRAVLVDLEP GTMDAVKSGK FGNLFRPDNI IYGQSGAGNI WAKGHYTEGA ELADAVLDVV 120
  121 RREAEACDAL QGFQLTHSLG GGTGSGMGTL LLSKIREEYP DRMMATFSVA PAPKSSDTVV 180
  181 EPYNATLSMH QLVENSDETF CIDNEALSSI FANTLKIKSP SYDDLNHLVS AVMAGVTTSF 240
  241 RFPGELNSDL RKLAVNMVPF PRLHFFMVGF APLAAIGSSS FQAVSVPELT QQMFDANNMM 300
  301 VAADPRHGRY LTVAALFRGK VSMKEVDEQI RSVQTKNSAY FVEWIPDNVL KAVCSVPPKD 360
  361 LKMSATFIGN STSIQEIFRR LGDQFSAMFR RKAFLHWYTG EGMDEMEFTE AESNMNDLVS 420
  421 EYQQYQEAGI DEGDEDYEIE EEKEPLEY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1ffxB
Description:	Tubulin:stathmin-like domain complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits