YRC Public Data Repository - Protein Structure Prediction

Protein:	taf1
Organism:	Schizosaccharomyces pombe
Length:	926 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf1.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	277.0	[0..2]	[840..2056]
gi\|47847498 - gi\|47847498\|dbj\|BAD21421.1\| mFLJ00279 protein [Mus musculus]	263.0	[0..3]	[841..412]
gi\|109094041 - gi\|109094041\|ref\|XP_001083662.1\| PREDICTED: similar to myosin, heavy polypeptide 9, non-muscle [Maca...	260.0	[0..3]	[841..878]
gi\|109451392, gi... - gi\|168270842\|dbj\|BAG10214.1\| myosin-9 [synthetic construct], gi\|152012993\|gb\|AAI50171.1\| Myosin, hea... HGNC:7579\|MIM:16... - heavy chain 9, non-muscle MYH9 - myosin, heavy chain 9, non-muscle	260.0	[0..3]	[841..1037]
MYH9_RAT - Myosin-9 OS=Rattus norvegicus GN=Myh9 PE=1 SV=3	259.0	[0..3]	[841..1037]
gi\|86369, gi\|636... - pir\|\|S03166 myosin heavy chain, gizzard smooth muscle [similarity] - chicken, gi\|63634\|emb\|CAA29793....	259.0	[0..3]	[841..1050]

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Predicted Domain #1

Region A:
Residues: [1-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFRLNDSFS GKSWTIDNVQ WTPQNLVAWI MELNIGLSDE AKLLLPNGMS LNETVLNSES  60
   61 DVVIYVLDQN LLTFTYDGDK IPSIPSLKGQ PISNVLTGII ADSSSDQWKD KISKCLSLLS 120
  121 DILESSSKIH NQLSVCHDEY STSIVSPEVA MNYLQRRQSG MKDLLFVFYE RLDRVSVSDL 180
  181 LHDFLALPTG SLPITPLKIL STNWTKLDSW LNSISARYAE AQKRVQQCIG AANSIIVSPF 240
  241 KEVPSIKEGD DAYYHLRSVA QDAANILQEI LKIESTSTTS QIKPKCNYET EITDCMEKLQ 300
  301 SNLSELKSSR KSSLISL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [318-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSFWLSFYKV SLRYDALYEY LRQIAEELDR SKFVLSQSRN IFSLYIDILM EALRRTEWQE  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.09691
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [378-926]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYNVSHDSSL PLDQEKELSL RKSWLSHFSN LLFNHGQLKY LPVLTRDEIS NYLLNIQAHP  60
   61 NYQTFHQMLS NRLSEYLGFP GSPREAVSNT VQANNSLHEK LAMYQNRCNN LEAMLSHQNG 120
  121 FNYNINNDGL SPNAPHPPIN EQSNSSQPFY RVSPSIVPLN VIRKLTNRKT SFTDSHILRL 180
  181 QDEVNQLRNE LDLVNKRNED LLIELQGKEE KIQYLETENE EVLQKYENLQ EELSSTRKLL 240
  241 TKNEAAVAEQ QSNEEMHSNE PNILNLYSVF EGKVDSLQEL YNAFKLQLTS LKQKGEYATL 300
  301 AKDAEAVQHI IEERDYALAE KADLLKLSEN RKEQCKILTQ KLYTIVFRCN ELQSVLRECV 360
  361 TQPGFDSDNE RDGHASIPDR QIEFNSKDLQ YLYWMDGEDA DRNFQEFLNR MSSLDFDSFH 420
  421 NFVVSVLTQA HNHELRWKRE FQSNRDKALK AILDSQSKVS LRNFKQGSLV LFLPTRRTAG 480
  481 NKKVWAAFNV NAPHYYLNTQ PHLKLESRDW MLGRVTSIED RTADDSTDKW LRLPSGTIWH 540
  541 LVEAIDERF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	1ciiA
Description:	COLICIN IA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits