YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2F7.13c
Organism:	Schizosaccharomyces pombe
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2F7.13c.

Description	E-value	Query Range	Subject Range
gi\|46099491, gi\|... - gi\|71019429\|ref\|XP_759945.1\| hypothetical protein UM03798.1 [Ustilago maydis 521], ref\|XP_401413.1\| ...	383.0	[0..2]	[392..21]
gi\|71059845, gi\|... - gi\|71059845\|emb\|CAJ18466.1\| Wars [Mus musculus], gi\|34328206\|ref\|NP_035840.2\| tryptophanyl-tRNA synt...	378.0	[0..3]	[387..84]
gi\|32709 - gi\|32709\|emb\|CAA44450.1\| IFP53 [Homo sapiens]	378.0	[0..3]	[387..80]
gi\|114654711 - gi\|114654711\|ref\|XP_001158800.1\| PREDICTED: tryptophanyl-tRNA synthetase isoform 5 [Pan troglodytes]	376.0	[0..3]	[387..64]
gi\|62460630 - gi\|62460630\|ref\|NP_001013188.2\| tryptophanyl-tRNA synthetase [Rattus norvegicus]	376.0	[0..3]	[387..84]

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Predicted Domain #1

Region A:
Residues: [1-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEEQIVTP WDVKGSIVDG EEKGIDYERL IVQFGTRKIT PEQLERFEKL TGKKPHLLLR  60
   61 RGAFFSHRDF DMILDRYEQK KPFYLYTGRG PSSDSMHLGH MIPFMFCKWL QDVFQVPLVI 120
  121 QLTDDEKFLF KQGVSLEDCQ RFARENAKDI IAVGFDPKKT FIFMNSTYVG GAFYQNVVRI 180
  181 AKCITANQSK ACFGFTDSDS IGKIHFASIQ AAPSFSSSFP HIFNGAKDIP CLIPCAIDQD 240
  241 PYFRLTRDVS GRLKFKKPAL LHSRFFPALQ GPQSKMSASK DSSAIFMTDT PNKIKNKINR 300
  301 HAFSGGGATI EIHREKGGNP DVDVAYQYLS FFLDDDEKLK QLYNTYKAGT LSTGEMKGEC 360
  361 IKLLQQFVSD FQAARSKVDE ATLDMFMDGS RKLEW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.30103
Match:	2ip1A
Description:	No description for 2ip1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits