YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC29A4.15
Organism:	Schizosaccharomyces pombe
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC29A4.15.

Description	E-value	Query Range	Subject Range
gi\|67155739\|ref\|... - Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP] gi\|67155739, gi\|... - gi\|67155739\|ref\|ZP_00417366.1\| Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP], gi\|67...	373.0	[0..1]	[433..182]
SYS_PSEAE - Seryl-tRNA synthetase OS=Pseudomonas aeruginosa GN=serS PE=3 SV=1 SYS_PSEAE - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ... gi\|254235598, gi... - gi\|84320581\|ref\|ZP_00968954.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa C3719], gi\|254... gi\|194552030, gi... - gi\|84326939\|ref\|ZP_00974963.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa 2192], gi\|2542... SYS_PSEA8 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain LESB58) GN=serS PE=3 SV=1 SYS_PSEAB - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serS PE=3 SV=1 gi\|107102134 - gi\|107102134\|ref\|ZP_01366052.1\| hypothetical protein PaerPA_01003183 [Pseudomonas aeruginosa PACS2]	373.0	[0..1]	[433..1]
SYS_PSEA7 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=serS PE=3 SV=1	372.0	[0..1]	[433..1]
gi\|25293165 - pir\|\|D97918 serine-tRNA ligase (EC 6.1.1.11) [imported] - Streptococcus pneumoniae (strain R6) gi\|15902416, gi\|... - gi\|15902416\|ref\|NP_357966.1\| seryl-tRNA synthetase [Streptococcus pneumoniae R6], gi\|15457932\|gb\|AAK...	370.0	[0..1]	[433..22]
gi\|251816747, gi... - gi\|253752458\|ref\|YP_003025599.1\| seryl-tRNA synthetase [Streptococcus suis SC84], gi\|251816747\|emb\|C... gi\|56684577 - gi\|56684577\|gb\|AAW21989.1\| SerS [Streptococcus suis] gi\|251820530, gi... - gi\|253754284\|ref\|YP_003027425.1\| seryl-tRNA synthetase [Streptococcus suis P1/7], gi\|251820530\|emb\|C...	368.0	[0..1]	[433..1]
gi\|81097200, gi\|... - gi\|81097200\|ref\|ZP_00875504.1\| Seryl-tRNA synthetase, class IIa [Streptococcus suis 89/1591], gi\|809...	367.0	[0..1]	[433..1]
gi\|183577467, gi... - gi\|183577467\|gb\|EDT97995.1\| seryl-tRNA synthetase [Streptococcus pneumoniae MLV-016], gi\|168576870\|r... gi\|149023698, gi... - gi\|149023698\|ref\|ZP_01836178.1\| seryl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72], gi\|14792... SYS_STRPN - Serine--tRNA ligase OS=Streptococcus pneumoniae GN=serS PE=3 SV=1 SYS_STRPN - Serine--tRNA ligase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=serS PE=... gi\|147757389, gi... - gi\|148996814\|ref\|ZP_01824532.1\| seryl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70], gi\|14775... SYS_STRZT - Serine--tRNA ligase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=serS PE=3 SV=1 gi\|242246026, gi... - gi\|242246026\|ref\|ZP_04800463.1\| seryl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A], gi\|242...	366.0	[0..1]	[433..1]
SYS_DECAR - Serine--tRNA ligase OS=Dechloromonas aromatica (strain RCB) GN=serS PE=3 SV=1	366.0	[0..1]	[433..1]
SYS_STRPF - Serine--tRNA ligase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=serS PE=3 SV=1	366.0	[0..1]	[436..1]

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Predicted Domain #1

Region A:
Residues: [1-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDINLFQVE KGGNPEIIRE SQRKRGADVG VVDKVIEMYK EWVSLRFELD NTNKSINRVQ  60
   61 KEIGLKMKAK EDASELLEEK NSLTERKKNL IEQETAKNKE MLNVVSSIGN IVHDSVPVSM 120
  121 DEDNNEIIRK WAPEGVTVEK KNCLSHHEVL TRLDGYDPER GVKVSGHRGY FLRQYGVFFN 180
  181 LALIQYGLDF LEKRGYIALQ APTMLNKDVM AKTAQLEQFD EELYKVIDGD EERYLIATSE 240
  241 QPISAYHSGE WFEKPSEQLP LKYAGYSTCY RREAGSHGRD AWGIFRVHAF EKIEQFVLTD 300
  301 PEKSWEAFTE MINHAEDFYK SLELPYRIVA IVSGALNNAA AKKYDLEAWF PFQGEYKELV 360
  361 SCSNCTDYQS RNLEIRCGVK KMGDREKKYV HCLNSTLCAT ERALCCILEN YQTPDGVNVP 420
  421 KVLQPYMGGK TFLPFTKELP KNSTSKKGKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.39794
Match:	2dq3A
Description:	No description for 2dq3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits