YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC25B2.09c
Organism:	Schizosaccharomyces pombe
Length:	618 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC25B2.09c.

Description	E-value	Query Range	Subject Range
YDR341C - Arginyl-tRNA synthetase, proposed to be cytoplasmic but the authentic, non-tagged protein is detecte... SYRC_YEAST - Arginine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR34...	462.0	[0..1]	[618..1]
gi\|44984202, gi\|... - gi\|45198315\|ref\|NP_985344.1\| AFL206Cp [Ashbya gossypii ATCC 10895], gi\|44984202\|gb\|AAS53168.1\| AFL20... gi\|44984202 - gi\|44984202\|gb\|AAS53168.1\| AFL206Cp [Ashbya gossypii ATCC 10895]	458.0	[0..6]	[618..46]
gi\|49640443, gi\|... - gi\|50302751\|ref\|XP_451312.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640443\|emb\|CAH0290... gi\|49640443 - gi\|49640443\|emb\|CAH02900.1\| KLLA0A07040p [Kluyveromyces lactis]	455.0	[0..6]	[618..46]
gi\|49524161, gi\|... - gi\|50284863\|ref\|XP_444859.1\| hypothetical protein CAGL0A02189g [Candida glabrata CBS138], gi\|4952416... gi\|49524161 - gi\|49524161\|emb\|CAG57752.1\| unnamed protein product [Candida glabrata]	442.0	[0..7]	[618..3]
gi\|49649955 - gi\|49649955\|emb\|CAG79679.1\| YALI0E17985p [Yarrowia lipolytica] gi\|50553350, gi\|... - gi\|50553350\|ref\|XP_504086.1\| YALI0E17985p [Yarrowia lipolytica], gi\|49649955\|emb\|CAG79679.1\| unnamed...	441.0	[0..2]	[618..36]
SYR_SYNP6 - Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argS PE=3...	439.0	[0..32]	[618..4]
SYR_SYNE7 - Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=argS PE=3 SV=2	439.0	[0..32]	[618..4]
gi\|7437755 - pir\|\|S75986 hypothetical protein - Synechocystis sp. (strain PCC 6803) SYR_SYNY3 - Arginyl-tRNA synthetase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=argS PE=3 SV=1 SYR_SYNY3 - Arginine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=argS PE=3 SV=1	430.0	[0..32]	[618..4]

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Predicted Domain #1

Region A:
Residues: [1-618]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSVDQISK SLSTLGLQDL PVFREADIHH NPVDVYRSYI SSELSKINGV DVSLIYPALE  60
   61 TSISKDSADL NLPVPRLRVK GKPQELAQKW AEAFPKDLVE VTANGIFLRF NFNGPSLTKL 120
  121 ILPIIWEQRE NYGRNESGSG KVAVIEFSSP NIAKPFHAGH LRSTIIGSFL ANLHESQGWK 180
  181 VHRVNYLGDW GKQFGLLAIG YKKYGDEDQL KSNPIRHLYD VYVKVNADAT EEDEKIQKDK 240
  241 AEAESKGLPY TPPLSLHDKA REFFKRMEDG DEESLKVWAR FRDLSITKLK DTYDRLNIHY 300
  301 DEYDGESQVS LELMNKMVDE LRSLNLIEED GGALLIDLSK HDKKLGKAIV QKRDGTTLYL 360
  361 TRDIGTAYKR YEKYKFDKSI YVVSSQQDMY FSQLFKIFEL MGFDWAKKCV HINYGLVQGM 420
  421 STRKGKAVFL DDIMEVAKEE MHKVMQKNEE KYAQVENPEE VADIVGKTAI RIQDSTGKRI 480
  481 NNYAFDWSRM TSFEGDTGPY LQYAHSRLSS VRRNVNYTDE EIMGANLELL TEPDAYDLVR 540
  541 LLGQYPDVLK NAFRFQETST VVTYLFKLTH AVSKLYDILW VRGRERDIQL ARLALFGAAK 600
  601 QVLNNGMTLL GLTPLERM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	130.0
Match:	1bs2A
Description:	Arginyl-tRNA synthetase (ArgRS); Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits