YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC4G8.09
Organism:	Schizosaccharomyces pombe
Length:	874 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4G8.09.

Description	E-value	Query Range	Subject Range
SYL_SYNEL - Leucyl-tRNA synthetase OS=Synechococcus elongatus GN=leuS PE=3 SV=1 SYL_THEEB - Leucine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuS PE=3 SV=1	701.0	[0..28]	[874..1]
gi\|82714711, gi\|... - gi\|82738215\|ref\|ZP_00901052.1\| Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia [Pseudomonas...	701.0	[0..13]	[874..26]
SYL_PELCD - Leucine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=leuS PE=3 SV=1	698.0	[0..28]	[873..1]
SYL_PSEF5 - Leucine--tRNA ligase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=leuS PE=3 SV=1	696.0	[0..28]	[873..1]
SYL_SYNPX - Leucine--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=leuS PE=3 SV=1	695.0	[0..28]	[872..1]
gi\|95112741 - gi\|95112741\|emb\|CAK17469.1\| leucyl-tRNA synthetase [Pseudomonas entomophila L48] SYL_PSEE4 - Leucine--tRNA ligase OS=Pseudomonas entomophila (strain L48) GN=leuS PE=3 SV=1	695.0	[0..28]	[874..1]
SYL_PSEU2 - Leucine--tRNA ligase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=leuS PE=3 SV=1	695.0	[0..28]	[873..1]
SYL_ANAVT - Leucine--tRNA ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=leuS PE=3 SV=1	694.0	[0..28]	[873..1]
SYL_SYNE7 - Leucine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=leuS PE=3 SV=1	694.0	[0..28]	[873..17]
SYL_PSE14 - Leucine--tRNA ligase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=leuS PE=3...	693.0	[0..28]	[873..1]

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Predicted Domain #1

Region A:
Residues: [1-874]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSVGTNGR KVPKIASLCN FLKFNKNIHS NPDFLAIAEN WKSYWKSHYP FVKNDKGKKK  60
   61 YILSMFPYPS GLLHIGHVRV YTISDILSRY YRMKGYKVIH PMGWDAFGLP AENAAIENGI 120
  121 SASSWTYENI KKMKEQTYHM NIYFDWDREI STCNPDYYKW SQYLFLQMFH KGLAYQAEAT 180
  181 VNWDPVDCTV LANEQVDSHG RSWRSGAIVE KKNLRQWFLK ISDYSDQLLD DLETLPKWPD 240
  241 KVKKMQRNWI GRTTGFEISF PLLNDKETLT VFTTKPETII DVSFIALSKN HKLVLLESQK 300
  301 DPSLAEHLRN ESLLDKGYQL PCFAKNPVTG KALPIFYAPY VLDCYGTGAV MGAPIHDRRD 360
  361 FEFAKRNNII FSKESCIGSY FTNEGKELLN HHDSSNLMDI KQKMLQQKIV SYLEEKKLAK 420
  421 RVKNYRLKDW LISRQRFWGT PIPMVHCETC GAVPVPESEL PVKLPDLDKI YEKGTSPLSN 480
  481 LETWMKTTCP KCHGPATRET DTMDTFVDSS WYYFRFLDSK NSELPVGLAS ASSLMPVDIY 540
  541 IGGVEHSILH LLYSRFFSKF MKDIGLWNGD KYLNEPFTQL ITQGMVHGLT YTTMSDERIL 600
  601 NPKEVQKIGD EYFLISNPKE KVQLSYQKMS KSKHNGVDPI RTIQKYGSDI IRAYIIFSAP 660
  661 VEGVLLWNEN AIMGTKRWLT KIWNCVHQLL EREKKMSDAM RQTKLTIVDD HNSRKLESQY 720
  721 NEFISQCSAH YENVFSLNLV ISDAMKLTNN IADALKNNKV NIGTIKASLE VLVKCIAPII 780
  781 PCFSSECWLL LGHNSSVYSN WPISKNKKEN MEEPVTIPVQ INGKVRFKIE MPKLNDENEI 840
  841 LNFVLETNDG KRWLSNKKVL KSFVKQKIIS LVTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	179.0
Match:	1h3nA
Description:	Leucyl-tRNA synthetase (LeuRS)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits