| Protein: | SPBC8D2.06 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1064 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC8D2.06.
| Description | E-value | Query Range |
Subject Range |
|
|
910.0 | [0..4] | [1063..10] |
|
|
906.0 | [0..4] | [1063..10] |
|
|
906.0 | [0..4] | [1063..27] |
|
|
898.0 | [0..2] | [1063..8] |
|
Region A: Residues: [1-834] |
1 11 21 31 41 51
| | | | | |
1 MSFNVPKEEE KIVEFWREID AFHTQLKLSQ GRPTYTFFDG PPFATGRPHH GHLLASTIKD 60
61 SVTRYACLKG YHVERRFGWD THGLPVEHEI DKKLGITGSD DVMAMGIDKY NAECRKIVMT 120
121 YASEWRATVE RLGRWIDFDN DYKTLYPSFM ESVWWVFKEL HTKGKVYRGY RVMPYSTACT 180
181 TPLSNFEAQQ NYKEVPDPAI VVAFQSISDP EVSFLAWTTT PWTLPSNLAL AVHPDLQYIK 240
241 ILDKDSNKKY ILMESCLGIL YKNPKKANFE ILERFQGKAL DGQKYEPLFP YFKSTFGERA 300
301 FKLYSADYVE EGSGTGIVHQ APAFGEADYD AAWAAGIIDA DHQPPCPVDE QGLLTSEITD 360
361 FAGQYVKDAD KEIIRSLKAS GHLVKHSQIF HSYPFCWRSD TPLIYRAVPS WFVRVKEITN 420
421 EMVENVMSTH WVPQNIRDKR FANWLKNARD WNISRNRYWG TPIPLWVSDD YEEVVCIGSI 480
481 KELEELSGVS NITDIHRDSI DHITIPSKKG KGTLHRVSEV FDCWFESGSM PYASRHYPFE 540
541 RIEEFKHGFP ADFISEGVDQ TRGWFYTLTV LGTLLFDKAP YKNVIVSGLV MAEDGKKMSK 600
601 RLKNYPEPNL IIEKYGSDAL RLYLINSPVV RAEILKFKED GVREVVTRVL IPWWNSYKFF 660
661 EAQAALYKKV TGKDFVFDDA ATLSSNVMDR WILARCQSLI GFVDEEMKQY RLYTVVPQLL 720
721 GLIEEMTNWY IRFNRRRLKG EDGEIETINA LNVLFEVLFT LVRIMGPFTP FITENIYQHL 780
781 RNYMPIDKNE ISLRSVHFLP FPTYKSELDD ETVLRRVKRM QTIIELARYV REQN
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1ileA |
| Description: | ISOLEUCYL-TRNA SYNTHETASE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [835-959] |
1 11 21 31 41 51
| | | | | |
1 NISLKTPLKT LIVILTNEEY LEDAKLLERY IAEELNVREV VFTSNEEKYG VVYSVQADWP 60
61 VLGKKLRKDM ARVKKALPNV TSEEVKEFQK NKKMVLDGIE LVEGDLQIIR SVEVKNEFLK 120
121 SNTDG
|
| Detection Method: | |
| Confidence: | 77.39794 |
| Match: | 1rqgA |
| Description: | Methionyl-tRNA synthetase from Pyrococcus abyssi |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [960-1064] |
1 11 21 31 41 51
| | | | | |
1 ICIVLLDIEI DAQLQAEGLA REVINRVQRL RKKSNLQVTD DVRMTYKIKN DTIGLESAVD 60
61 SNEALFSKVL RRPIEKETGA DESNIIASEE QDVQGATFLL SLLRL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.926 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.609 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.563 | d.323.1 | Description not found. |
| View | Download | 0.539 | d.208.1 | MTH1598-like |
| View | Download | 0.536 | d.241.2 | Description not found. |
| View | Download | 0.531 | d.208.1 | MTH1598-like |
| View | Download | 0.528 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.523 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.379 | d.110.4 | SNARE-like |
| View | Download | 0.326 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.295 | d.110.4 | SNARE-like |
| View | Download | 0.293 | d.110.4 | SNARE-like |
| View | Download | 0.265 | d.80.1 | Tautomerase/MIF |
